Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0640 ATGCATGACCCACCGCCACCTGCCGTTGACTCCTCCCCCACAGCAGCGCCGTCGGCGAGTCTCAAGGCAAAGTTGAGGAAGATTCCTCCCATTCCCGTTCGGCGAAACCCTAGAGACGACTCTGTTGACGATAAGGAGGAGGAGGGCGATGGAGAGAGTGAAAACGACGACGTTTCCGATGATGATTCCGAATTCATTCTGGCTTCCTCCCTAGGCCTCAATCAGATTCGGACTCGCTCCAGTCCTTCGCCTCTTCGGTTCACCTCTCTGGCCGGTGAGCCTCCGAACCTTGGGAATGATGCCAAGAAGAATAAGGATGGAGCCGAAGCTCGCCCGAAAAGGACGAGTCCTCTGTGCCGGGCAACCTCCATGGAGCATAGTCAAGGTAAAAAGATATCATGGATTCAACCAAAATCTTTTAGAGTGCCATCACCACTTAATCCAGGATTGGAGGCTCATCATGCAATTCTTGCCAAAGAAATTCAATCTCCTCGTTTTCAAGCTATATTGCGAGTCACAAGTGGGCGTAGGAAAAGAACCTCAGATATTAAGAGCTTCTCTCATGAACTCAACTCTAAAGGAGTGCGGGCTTTTCCATTCTGGAAGTCTCGTGCAGTTGGCCATATGGAGGAGATTATGGTTGTGATCAGGGCAAAATTTGACAGATTAAAGGAAGAAGTTAATTCTGATTTAGGCATATTTGCTGGAGATTTGGTGGGCATACTTGAAAAAACTGCAGAAACTAAACTTGAATGGAAAGAGGGTTTAGAGGACTTGTTAATTGTAGCCCGGCACTGTGCAAAGATGCCACCAAATGAATTTTGGTTGAAGTGTGAAGGCATTGTTCAGAATTTAGATGATCGGCGTCAGGAACTGCCAATGGGCACTCTCAAGCAAGCCCACACTCGCCTTCTTTTTATCCTTACTCGATGCACTCGCCTTGTGCAGTTCCATAAAGAGAGTGGTTATGAAGAAGATCACATTCTGGGTCTTCATCAACTCAGTGATCTTGGAATCTATTCGGAGCATATACTTGGGGCCATGCAGCAAGAAAGTGGTGGTCCTGTGGATGTGAATGAGAAGCAGTCAAAGAAGTCACATGCCCAGGAACACAGCAGTTTGGCTCCAAAGCAAGATCAAGTAGATCATGATTTAGATAGTGGAGTGGAAGATCATGAAGTTGGCACTGCCAAAAGTGCTGATTCAATTACAAGCAGCTACAAAATGTCATCTTGGAAGAAATATCCATCTACAGCAGAGAAAAACCACAGGAAAGGCAATGAGGCTGTTGATATGACCTCCAAGGTTAAACTAGATCCCTTGCCAGTTAAAGATGAAAACAAAACTGGTATCAATGATAATACTGGAAATATGGTTACTCCATCCTGCCTTTCTGAAAATGCAGAGGCAACCTCGAAAGTACACAGAGTTTCTTGGGGATGCTGGAGTGATCAACAACAAATAACATATGAAAATTCAATGATCTGTCGTATTTGTGAGGTTGAAATACCGACTGTGCATGTAGAGGATCACTCCAGAATATGTACAATCGCGGATAGATGCGACTTAAAAGGATTAACTGTAAATGAAAGGCTTGAAAGGGTTGCAGAGACTCTTGAAAGGATACTGGAATGTTGGACACCAAAAAGCACTGACACTTCAGGAGGAAGTCCTGATATTGTGAGAGTGTCCATATCAAGTGCGTCTGAAGAGTTAGATGATTTTTCCCCTAAAAAAAACACCTTGTCTCGATCGTGCTCTACGGACATGCTTGATTGTGTAAATGAAGCTGATAATGAGTTTGTCATGGATGATCTTAATGTTTTGCCTGAAATGTCATGTGATACTCGCTCTTTTCTGACAACTGATCAAGGTACCAGAGCTTCATCATCTGGAAGCTTAACACCACGATCACCATTATTAACACCACGTACCAACCAGATTGAATTGCTTTTGAGTGGACGAAGAGCAATCTCAGAGCATGAAAATTTTCAGCAGATAAGCAAGCTACTGGATATTGCTCGTTCAGTTGTCACTGTTAATTCAAATGATTATAGTGCTTTGGAGTATATGCTTGATCGTCTAGAAGACCTAAAATATGCAATCCAGTATAGAAAAGTGGATGCCCTTATTGTTCAGACTTTTGGGAGGCGTATAGAAAAACTACTACAGGAGAAATATGTTCATCTTTGTGGACAGATAGAAGATGAAAAGATAGATTCATCTAATACCATGGCTGATGAAGACAGTCCAGTGGAAGATGATGCTGTTCGCAGTTTGCGCGCTAGCCCCATCAATCCATCTTGTAAGGATCGAACATCTATAGAAGATTTCGAAATATTGAAACCAATCAGTAGAGGAGCATTTGGACGAGTGTTCCTTGCCAGAAAAAGAGCAACTGGTGACTTGTTTGCAATAAAGGTTTTAAAAAAAGCTGATATGATTCGTAAAAATGCAGTTGAAAGCATTTTGGCAGAACGTAACATCCTAATATCAGCCCGCAATCCTTTTGTGGTTCGATTTTTCTACTCCTTCACATGCAGGGAAAACCTTTATCTGGTGATGGAATACTTAAATGGAGGAGATCTTTACTCTTTGTTGAAAAATCTTGGCTGCTTAGATGAAGACATGGCACGTGCGTATATTGCGGAAGTTGTTCTTGCTTTGGAGTATTTGCATTCCTTAAACGTGATTCATAGAGATTTGAAGCCCGACAACTTATTGATTGGTCATGATGGCCACATCAAGTTGACAGATTTTGGGCTTTCTAAGGTTGGTCTTATCAACAGCACCGAGGACTTATCAGGTCCTTCAGTACTGCTTGGACATGATGAACCAAATACCACTGTACAAAAACCATTGAAAAGAGAACAGCGTCAAAAGCATTCAGTTGCTGGAACCCCTGATTATTTGGCACCTGAGATACTTCTTGGCATGGGACATGGCACAACGGCAGATTGGTGGTCTGTTGGGGTTATTCTTTTTGAGCTGCTTGTAGGTATTCCACCATTCAATGCAGCAAATCCACAGAAAATTTTCGACAATATTATGAATAGAGATATACCCTGGCCGAAAGTACCTGAGGAAATGAGCTTTGAAGCACATGATTTAATTGAAAAATTGCTGATTGAAAATCCATTTCAAAGGCTCGGAGCTACAGGGGCTAGTGAGGTGAAGAAACATGTGTTCTTCAAAGGCATTAATTGGGACACATTTGCAAGGCAGAAGGCTATGTTCATACCATCGGCAGAAAGTGCATATGACACAAGTTATTTCATGAGCCGATACATATGGAATCCTGAGGATGAACATGTCCATGGAGAAAGTGACTGTGAAGACACGACTGAAACATGCAGTGGTACATGCAGCAGCGGTTCATTCAGCAATGGGGATGAGTGTGGTAATTTGGCAGACTTTAGTGCTCCAAACCTTGCTGTCAATTACTCATTTAGTAATTTCTCTTTCAAGAACTTGTCTCAACTGGCTTCCATCAATTACGATTTGCTTGTGAAGACTTTTAAGGATTCACCAGAAACGTCCAGATCGTCCAATCCATGA 3558 0.4264 MHDPPPPAVDSSPTAAPSASLKAKLRKIPPIPVRRNPRDDSVDDKEEEGDGESENDDVSDDDSEFILASSLGLNQIRTRSSPSPLRFTSLAGEPPNLGNDAKKNKDGAEARPKRTSPLCRATSMEHSQGKKISWIQPKSFRVPSPLNPGLEAHHAILAKEIQSPRFQAILRVTSGRRKRTSDIKSFSHELNSKGVRAFPFWKSRAVGHMEEIMVVIRAKFDRLKEEVNSDLGIFAGDLVGILEKTAETKLEWKEGLEDLLIVARHCAKMPPNEFWLKCEGIVQNLDDRRQELPMGTLKQAHTRLLFILTRCTRLVQFHKESGYEEDHILGLHQLSDLGIYSEHILGAMQQESGGPVDVNEKQSKKSHAQEHSSLAPKQDQVDHDLDSGVEDHEVGTAKSADSITSSYKMSSWKKYPSTAEKNHRKGNEAVDMTSKVKLDPLPVKDENKTGINDNTGNMVTPSCLSENAEATSKVHRVSWGCWSDQQQITYENSMICRICEVEIPTVHVEDHSRICTIADRCDLKGLTVNERLERVAETLERILECWTPKSTDTSGGSPDIVRVSISSASEELDDFSPKKNTLSRSCSTDMLDCVNEADNEFVMDDLNVLPEMSCDTRSFLTTDQGTRASSSGSLTPRSPLLTPRTNQIELLLSGRRAISEHENFQQISKLLDIARSVVTVNSNDYSALEYMLDRLEDLKYAIQYRKVDALIVQTFGRRIEKLLQEKYVHLCGQIEDEKIDSSNTMADEDSPVEDDAVRSLRASPINPSCKDRTSIEDFEILKPISRGAFGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISARNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLKNLGCLDEDMARAYIAEVVLALEYLHSLNVIHRDLKPDNLLIGHDGHIKLTDFGLSKVGLINSTEDLSGPSVLLGHDEPNTTVQKPLKREQRQKHSVAGTPDYLAPEILLGMGHGTTADWWSVGVILFELLVGIPPFNAANPQKIFDNIMNRDIPWPKVPEEMSFEAHDLIEKLLIENPFQRLGATGASEVKKHVFFKGINWDTFARQKAMFIPSAESAYDTSYFMSRYIWNPEDEHVHGESDCEDTTETCSGTCSSGSFSNGDECGNLADFSAPNLAVNYSFSNFSFKNLSQLASINYDLLVKTFKDSPETSRSSNP* 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0640 1185 SMART serkin_6 778 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0640 1185 CDD STKc_MAST_like 784 1069 - -
Vvi16g0640 1185 PANTHER SERINE/THREONINE-PROTEIN KINASE 429 1154 - -
Vvi16g0640 1185 Gene3D Phosphorylase Kinase; domain 1 776 1092 - -
Vvi16g0640 1185 FunFam Probable serine/threonine protein kinase IREH1 862 1082 - -
Vvi16g0640 1185 MobiDBLite consensus disorder prediction 352 385 - -
Vvi16g0640 1185 ProSiteProfiles AGC-kinase C-terminal domain profile. 1065 1165 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi16g0640 1185 Pfam Protein kinase domain 779 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0640 1185 FunFam probable serine/threonine protein kinase IREH1 776 865 - -
Vvi16g0640 1185 MobiDBLite consensus disorder prediction 43 63 - -
Vvi16g0640 1185 SUPERFAMILY Protein kinase-like (PK-like) 775 1097 IPR011009 -
Vvi16g0640 1185 MobiDBLite consensus disorder prediction 1 127 - -
Vvi16g0640 1185 MobiDBLite consensus disorder prediction 99 113 - -
Vvi16g0640 1185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Vvi16g0640 1185 MobiDBLite consensus disorder prediction 358 385 - -
Vvi16g0640 1185 Gene3D Transferase(Phosphotransferase) domain 1 862 1082 - -
Vvi16g0640 1185 ProSiteProfiles Protein kinase domain profile. 778 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0640 1185 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0640 Vvi-Chr16 13169033 13189943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0640 25 1185 AGC Kinase Gene Family AT5G62310 63.713 0.0 1455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vvi16g0640 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0640 - - vvi:100252544 2313.88