Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0639 ATGGTACATCAGTTGTGGGGCTTGGGCTCTCCAAAAAATTGTTGTGCTTCTGCAATTATTATACCACCACCCAGCGAAGCTAGCCTAGTGATGGGAAGGCAACCTTGCTGCGACAAGCTTGGCGTGAAGAAAGGGCCATGGACTGCCGAGGAGGACAAGAAGCTAGTCACCTTTATCCTCACCAATGGCCACTGCTGCTGGCGTGCCCTCCCCAAGCTCGCTGGCCTGCGCCGCTGCGGCAAGAGTTGCCGCCTCCGCTGGACTAACTATCTCCGCCCTGATTTGAAGCGGGGACTCCTTAATGAGGCTGAAGAACAGCTGGTCATCGATCTCCATGCCCGCCTTGGCAATAGGTGGTCCAAGATTGCTGCTAAGTTGCCTGGAAGAACAGACAACGAGATAAAAAATCACTGGAATACCCACATCAAGAAGAAGCTTATCAAAATGGGAATTGATCCAGTCACTCATGAACCTCTTCATGAACATGTTACACCCCCAGAAATGCCGACCCTGGTTGACACTGAACACCAGGAACTCAGCAAAACTAACGACAATCTCATCACCTCTGATGCCAATTCAAGCTCAACCCTCGAAAACAACTCCACCGACGAGCACCGGCCATTAGGCCCTGCAAGTGAAGACGACCCATTGATGATGAGCTACATATGGTCTGACGAATTTCTCAGCAATGTGTCATGGAGTTTTCTGGCCCAGGGAGAAGAATGCAGCGAGTTGGGATTCTCGTCCACGACCCCCTCAGAAGACGGCTCGTCATGGTGGCTGGATTACGAGGATTTCATGAATGAAGATTTCGGGTTCAATTGTTTGAATGAAGTGAAGATGGAAACGTTGGAAAATGATGACAAGCTCTAA 873 0.5017 MVHQLWGLGSPKNCCASAIIIPPPSEASLVMGRQPCCDKLGVKKGPWTAEEDKKLVTFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLHEHVTPPEMPTLVDTEHQELSKTNDNLITSDANSSSTLENNSTDEHRPLGPASEDDPLMMSYIWSDEFLSNVSWSFLAQGEECSELGFSSTTPSEDGSSWWLDYEDFMNEDFGFNCLNEVKMETLENDDKL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0639 290 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Vvi16g0639 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 31 211 - -
Vvi16g0639 290 Pfam Myb-like DNA-binding domain 102 141 IPR001005 -
Vvi16g0639 290 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Vvi16g0639 290 Gene3D - 101 146 - -
Vvi16g0639 290 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Vvi16g0639 290 CDD SANT 46 91 IPR001005 -
Vvi16g0639 290 FunFam MYB transcription factor 100 178 - -
Vvi16g0639 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Vvi16g0639 290 FunFam MYB transcription factor 41 97 - -
Vvi16g0639 290 CDD SANT 101 142 IPR001005 -
Vvi16g0639 290 Gene3D - 43 96 - -
Vvi16g0639 290 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Vvi16g0639 290 MobiDBLite consensus disorder prediction 184 206 - -
Vvi16g0639 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 91 IPR017930 -
Vvi16g0639 290 MobiDBLite consensus disorder prediction 184 213 - -
Vvi16g0639 290 SMART sant 96 144 IPR001005 -
Vvi16g0639 290 SMART sant 43 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0639 Vvi-Chr16 13107237 13108680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0639 31 289 MYB Transcription Factor Family AT4G12350 51.930 5.90e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0639 Myb_DNA-binding 9.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0639 K09422 - vvi:100244033 617.461