Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0617 ATGGAGGCTTGTATTCTCAGAAACCCATCTGCATTCCATGTTCTCTCATCCCTTTTCTTCACTCTTCTTCTTTTCAACTCCATCACCCTAACCTCATCCGCAAACACCAGCACTATTTCTCTCACAATCAGCAAACAGTTCATCAAAACTTCATGCAATTCAACCACATATCCTGGTGTTTGCTACAAATCACTCTCCTCCTATGCCTCCAAGGTCCAAACCAGCCCCCTGAAGCTCGCCAATGTGGCTCTCACAGTAAGCCTAAAAGCTGCCCGCAACGCGTCTTCCACCATCACACTGCTGCTGGAACGAAAAGGGATGACCCGCATGGAAACATCAATCGTTAAGGACTGTGTCGAGAATTTTGGGGACTGCATCGATGAACTGCAGCAGTCCTTGCAGGAGTTCAAGAGCCTAGGAGGTGGGAAAAATGTGGCTTTCCAAATGGCTAATATAAAGACATGGGTGAGTGCTGCATTAACAGATGAGTACACCTGCTCTGATGGATTTGAAGGCCAGAAGGTGAGCTCTTCCTTGCAGCAGCAAATCAAGAATTATATTTCGAATGTTGCCAAGATCACCAGCAATGCTTTGGCTCTCATCAACAATCTTTCTGTTACTGATATTAAATCCTAG 636 0.456 MEACILRNPSAFHVLSSLFFTLLLFNSITLTSSANTSTISLTISKQFIKTSCNSTTYPGVCYKSLSSYASKVQTSPLKLANVALTVSLKAARNASSTITLLLERKGMTRMETSIVKDCVENFGDCIDELQQSLQEFKSLGGGKNVAFQMANIKTWVSAALTDEYTCSDGFEGQKVSSSLQQQIKNYISNVAKITSNALALINNLSVTDIKS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0617 211 SMART PMEI_2 43 200 IPR006501 GO:0004857
Vvi16g0617 211 NCBIfam pectinesterase inhibitor domain 16 204 IPR006501 GO:0004857
Vvi16g0617 211 Pfam Plant invertase/pectin methylesterase inhibitor 47 200 IPR006501 GO:0004857
Vvi16g0617 211 PANTHER PECTINESTERASE INHIBITOR-LIKE 18 200 - -
Vvi16g0617 211 FunFam Pectinesterase inhibitor 3 43 205 - -
Vvi16g0617 211 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 204 IPR035513 -
Vvi16g0617 211 CDD PMEI-like_3 50 205 - -
Vvi16g0617 211 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 205 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0617 Vvi-Chr16 12509104 12509739 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0617 44 209 Carbohydrate Esterase AT1G53830 29.341 4.44e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0617 - - vvi:100265520 394.43