Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0613 ATGGAAGGCTCATCTAATTCTGCCCATTTCCTTGCAGCTTTTCTCATTTTGTTCGCCTTCCATTTTAACTCAATCTCAGCCGCAGGGCCTGCTGCCCGGAAAGACAACACCGAGTTCATCCGAACATCTTGTGGTACAACAATTTATCCCAGACTTTGCTTCACCTCCCTCTCAGCTCATGCAAATGTGATTCAAACAAGCCCAAGGCTTCTAGCTGACACAGCTCTGTCTGTAACCCTTTCAACTGCCCGATCGACCTCGTCTGTGATGTCAAATCTGCTTTTAAGCCATGGCCTGAAGCCTAGAGAAGTTGTAGCCATGAAGGACTGTGTGGAAGAGCTGAGCGACTCAGTGGATCAGCTTAGAAAAGCCATGGGGGAGATGAACCAGATAAAAGGCTCCAATTTTGGGCTCATAATGAATGACATACAAACTTGGGTTAGCGCCGCTTTGACGTATGAGGATACGTGCACAGACGGGTTTGCTGGAAATACCATGGACGGGAAGCTCAAGAAGGCAGTGAGGACTCGCATAGTGAAAATTGCACATATGACTAGCAATGCTTTGGCTTTGATCAATAGTTATGCATCTTTTCACAATTAG 603 0.4643 MEGSSNSAHFLAAFLILFAFHFNSISAAGPAARKDNTEFIRTSCGTTIYPRLCFTSLSAHANVIQTSPRLLADTALSVTLSTARSTSSVMSNLLLSHGLKPREVVAMKDCVEELSDSVDQLRKAMGEMNQIKGSNFGLIMNDIQTWVSAALTYEDTCTDGFAGNTMDGKLKKAVRTRIVKIAHMTSNALALINSYASFHN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0613 200 Coils Coil 111 131 - -
Vvi16g0613 200 PANTHER PECTINESTERASE INHIBITOR-LIKE 13 191 - -
Vvi16g0613 200 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 195 IPR035513 -
Vvi16g0613 200 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Vvi16g0613 200 SMART PMEI_2 35 191 IPR006501 GO:0004857
Vvi16g0613 200 Pfam Plant invertase/pectin methylesterase inhibitor 39 191 IPR006501 GO:0004857
Vvi16g0613 200 FunFam Pectin methylesterase inhibitor 1 35 195 - -
Vvi16g0613 200 CDD PMEI-like_3 42 197 - -
Vvi16g0613 200 NCBIfam pectinesterase inhibitor domain 11 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0613 Vvi-Chr16 12380477 12381079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0613 40 192 Carbohydrate Esterase AT1G53830 32.903 1.41e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0613 - - vvi:100260301 381.719