Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0612 ATGGAAGGCTCATTTTCTAGCCATTTCCTTGCAGCTCTTATCATTTTTCTTTCCTTCACTTCCTGTGCAAACTTAAGCTCAGCAGCCAGGCCTGCTGCAGAGAAAGCCAGCACCGAGTTCATCCGAACATCTTGTGGTACAACCACTTATCCCAAACTTTGCTACACCTCCCTCTCAGCTCATGCCAGTGTAATCCAAACCAGCCCAAAGCTTCTAGCAGACACAGCCCTTGCTGTGACCCTTTCAACCGCACGATCTACATCATCCCTGATGTCAAAGATGGTGCAAAGTCATGGCCTAAAGCCTAGAGAAGTTGCAGCCATGCACGACTGTGTGGAAGAGTTGAGCGACTCAGTAGATCAGCTTCGAAAAGCAATGGGGGAGATGACCCAAATAAAAGGCTCCAATTTTGGGCTCATGATGAATGACATACAAACATGGGTTAGTGCTGCCCTGACGGATGAGGACACATGCACTGATGGGTTCGCCGGAAACGCCATGAATGGGAATCTAAAAACCACCGTGAGGGCTCGTGTAGTTAACATGGCGCATATGACTAGCAACGCCTTGGGTTTGATCAATAGTTATGCTTCCCTTCACAATTAG 606 0.4802 MEGSFSSHFLAALIIFLSFTSCANLSSAARPAAEKASTEFIRTSCGTTTYPKLCYTSLSAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQSHGLKPREVAAMHDCVEELSDSVDQLRKAMGEMTQIKGSNFGLMMNDIQTWVSAALTDEDTCTDGFAGNAMNGNLKTTVRARVVNMAHMTSNALGLINSYASLHN* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0612 201 FunFam Pectin methylesterase inhibitor 1 36 196 - -
Vvi16g0612 201 CDD PMEI-like_3 43 198 - -
Vvi16g0612 201 PANTHER PECTINESTERASE INHIBITOR-LIKE 13 192 - -
Vvi16g0612 201 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857
Vvi16g0612 201 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 196 IPR035513 -
Vvi16g0612 201 Coils Coil 112 132 - -
Vvi16g0612 201 SMART PMEI_2 36 192 IPR006501 GO:0004857
Vvi16g0612 201 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 195 IPR035513 -
Vvi16g0612 201 NCBIfam pectinesterase inhibitor domain 13 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0612 Vvi-Chr16 12359487 12360092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0612 41 195 Carbohydrate Esterase AT1G53830 29.936 1.98e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0612 - - vvi:100255225 393.66