Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0600 ATGGCGACAAAAATTGTGTCACTTATGGTATTCATATCCTTCTCTTCTTCTATATTCTCAACAGCCCAATCGAAAAATGGTTGTGGCAACATAAAATGGTGGTGCAACACCACGCCGCATCCTGAGCCCTGCAAGTATTTCATGAGCCATAGCCACCAACGTTTTGCACCCGATCATAAGTCCGATTTTCGGAGGATGTTGGTGCAAGTAGCCATGGATCGAGCCCTTCATGGGCAGAGGCAGGTGCTGCGGTCCGGCTCCAATTGTGTGAACAAGTGGCAGAAAGGCGCTTTGAATGACTGTTTGAAGCTCTATGAGGACACCGTGTACCAGCTAAATCAAACTCTTCAAGGCCTACATGGTAACCAAAGTTGTAGCGATTTTGATGCTCAAACATGGCTTAGCACCGCCTTTACGAATCTAGAAACTTGTCAAGACAGCGCCAAGGATCTTAACGTCACAAACTTCATATTCCCCCTCATGTCCAACAATGTTTCTGAGCTCATCAGCAACAGCTTGGCTATAAATGATGGACTTATGGAGGGAACCAGTTATAGAGGGGGATTTCCTAGCTGGGTTTCGGCTGGTGAGAGGAAGTTGTTGCAGTCTACGTCGCTTGCTACAAGTGCAAATCTTGTAGTAGCGAAGGATGGCTCGGGAGATTTTAGCTCCATTCAAGCTGCTATAAATGCAGCAGCGAAGAGGACAAGCAGTGGGAGGTTCATTATATATGTGAAAAAGGGTCTTTATAGGGAGAATATTGAAGTTGGCATCAATGTAAACAATATTACGCTGGTTGGTGATGGCATGAAGAAAACAATCATCACTGGCAGCAGGAGTGTTAGAGGAGGCTACACCACCTACAACTCTGCAACTGCTGGAATCCAAGGTCTTCGCTTTATCGCACGAGGCATTACATTCAAGAACACAGCCGGTCCAAAAAATGGCCAAGCAGTTGCACTCAGATCAAGTTCTGATCTCTCGGTCTTCTACCACTGTGCCTTCCAAGGGTACCAAGATACCCTCATGGTCCACTCCCAACGGCAATTCTATAGAGAATGCTACATCTATGGCACCATAGACTTCATATTTGGAAACGCAGCAGTAGTTTTCCAACAGTGCATGATCTTTGCTAGAAGGCCCCTACAAGGCCAAGCCAACGTGATCACAGCTCAGGGCCGGGGCGATCCATACCAAAACACTGGAATATCCATCCATAATTCTCGAATTCTTGCTGCATCTGACCTAAAGCCAGTGGTTGGATCATTCAAAACATACTTGGGAAGGCCATGGCAGCAATATTCACGAACCGTTATCCTCAAAACTTACCTTGATAGCTTGGTTGATCCATCAGGGTGGTCACCATGGGGCACTTCTAATTTTGCTCAGAGTACATTGTATTATGGTGAATATCAGAATTTTGGACCTTCTTCATCAACCAGAAATAGGGTGAAGTGGTCTGGTTATCATGTTATTACTAGTGCAACCGTGGCATCGCGGTTCACCGTCGGCAGCTTCATTGCTGGCCAGTCATGGCTGCCGGCCACCGGTGTGCCCTTCACTTCCGGGCTCTGA 1575 0.4673 MATKIVSLMVFISFSSSIFSTAQSKNGCGNIKWWCNTTPHPEPCKYFMSHSHQRFAPDHKSDFRRMLVQVAMDRALHGQRQVLRSGSNCVNKWQKGALNDCLKLYEDTVYQLNQTLQGLHGNQSCSDFDAQTWLSTAFTNLETCQDSAKDLNVTNFIFPLMSNNVSELISNSLAINDGLMEGTSYRGGFPSWVSAGERKLLQSTSLATSANLVVAKDGSGDFSSIQAAINAAAKRTSSGRFIIYVKKGLYRENIEVGINVNNITLVGDGMKKTIITGSRSVRGGYTTYNSATAGIQGLRFIARGITFKNTAGPKNGQAVALRSSSDLSVFYHCAFQGYQDTLMVHSQRQFYRECYIYGTIDFIFGNAAVVFQQCMIFARRPLQGQANVITAQGRGDPYQNTGISIHNSRILAASDLKPVVGSFKTYLGRPWQQYSRTVILKTYLDSLVDPSGWSPWGTSNFAQSTLYYGEYQNFGPSSSTRNRVKWSGYHVITSATVASRFTVGSFIAGQSWLPATGVPFTSGL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0600 524 Pfam Plant invertase/pectin methylesterase inhibitor 31 175 IPR006501 GO:0004857
Vvi16g0600 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Vvi16g0600 524 PANTHER PECTINESTERASE 12 514 - -
Vvi16g0600 524 FunFam Pectinesterase 205 524 - -
Vvi16g0600 524 CDD PMEI-like_3 33 179 - -
Vvi16g0600 524 SMART PMEI_2 26 175 IPR006501 GO:0004857
Vvi16g0600 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Vvi16g0600 524 Pfam Pectinesterase 211 509 IPR000070 GO:0030599|GO:0042545
Vvi16g0600 524 Gene3D - 206 524 IPR012334 -
Vvi16g0600 524 SUPERFAMILY Pectin lyase-like 206 523 IPR011050 -
Vvi16g0600 524 NCBIfam pectinesterase inhibitor domain 5 179 IPR006501 GO:0004857
Vvi16g0600 524 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0600 Vvi-Chr16 12134008 12136218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0600 34 524 Carbohydrate Esterase AT5G51490 62.103 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0600 K01051 - vvi:100246795 1037.33