Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0599 ATGGCGATAAAGCTCGAGTTATTCGCAATTTTTATGCTCTCTTTGTCATTTTTCTCTTCCACCATATTGGCTTCTGACTCCGGCGACGTCAACTGGTGGTGCGACAAAACGCCATATCCGGCACCATGCAAGTACTTCATGAGCCATGGTGGGCACAAGTACAATGCGCCCAAGAAAAAGTCTGAGTTCCAAAAGATGGCTATGCAAGTGGCCATGGAGAGAGCCCTCACCGCGCAGAGCCACAACAAGTGGCTGGGGTCCAAGTGCCGCAACGAGCGCGAGAAGGCTGCATGGGCTGATTGCTTGAAGCAGTATCAAGACACCATTCAACAACTCAACCAAACCCTGGACCCTGCAACCAAGTGCACAGACTTTGACCAGCAAACTTGGCTCAGCACAGCCTTGACAAACCTCGACACATGTCGGGCAGGTTTCGTGGAGCTCGGCGTTTCAGACTTCGTGTTGCCTCTCATGTCCAACAATGTGTCAAAGCTGATCAGCAACAGTTTAGCTATGAAAAATGATATTCCCGAGAAACATACATACAAAGAAGGGTTTCCCAGTTGGGTTAAAGCTGGGGATAGGAGGCTTTTGCAGTCAACGTCGACGGCGGCAAAGGCAAACCTAGTGGTGGCCCAGGATGGATCAGGGAATTATAAGACCATAAAGGCGGCGATTGAAGCAGCGGCGAAGAGGAGTGGGAGTGGGAGGTATGTGATACATGTGAAGAAAGGTGTGTACAAGGAGAATATAGAGATTGGGAACAAAATGAAGAATATAATGCTAGTGGGTGATGGGCTGAGGAACACCATTATTACTGGCAGCCGCAGCGTTGGAGGAGGCTTCACCACCTTCAACTCTGCCACAGTTGCTGTGACTGGTGAAGGTTTCATAGCCCGTGGCATCACATTCCGCAACACGGCCGGTCCACAGAATCACCAAGCAGTGGCGCTCCGGTCAGGCTCCGACCTCTCTGTCTTCTACCAATGCTCCTTTGAAGGATACCAAGACACCCTCTATGTCCACTCGCAGCGACAATTCTACAAAGAATGCTACATCTATGGAACAGTAGACTTCATATTTGGCAACGCAGCAGTGGTCCTCCAAAACTGCATGATCTATGCCAGGAGGCCTATGGATAAACAAAAAAATGTAGTCACAGCACAAGGCAGAACTGATCCAAACCAAAACACCGGGATATCCATCCATAACAGCCGTGTCATGGCTGCAACCGACCTTAAACCGGTGCTGAGTTCCTTCAAGACCTACTTGGGACGGCCATGGAAGGAGTACTCACGGACTGTTTACCTTGGAACTTACCTTGATACCTTGGTGGACTCTGCAGGATGGTTGGAATGGGATGGAAACTTTGCCCTGAATACTTTGTACTATGGCGAGTATAAGAATTTCGGGCCTGGTTCATCGACCAGTGGGAGGGTGAAGTGGCGAGGCTATCGGGTTATAACCAGTGCAACTGAAGCTTCCAAGTTCAGTGTCGCCAACTTTATAGCTGGCCAGTCATGGTTACCGGCCACTGGTGTCCCGTTCAGGTCTGGTCTATGA 1563 0.4997 MAIKLELFAIFMLSLSFFSSTILASDSGDVNWWCDKTPYPAPCKYFMSHGGHKYNAPKKKSEFQKMAMQVAMERALTAQSHNKWLGSKCRNEREKAAWADCLKQYQDTIQQLNQTLDPATKCTDFDQQTWLSTALTNLDTCRAGFVELGVSDFVLPLMSNNVSKLISNSLAMKNDIPEKHTYKEGFPSWVKAGDRRLLQSTSTAAKANLVVAQDGSGNYKTIKAAIEAAAKRSGSGRYVIHVKKGVYKENIEIGNKMKNIMLVGDGLRNTIITGSRSVGGGFTTFNSATVAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAATDLKPVLSSFKTYLGRPWKEYSRTVYLGTYLDTLVDSAGWLEWDGNFALNTLYYGEYKNFGPGSSTSGRVKWRGYRVITSATEASKFSVANFIAGQSWLPATGVPFRSGL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0599 520 Pfam Plant invertase/pectin methylesterase inhibitor 30 172 IPR006501 GO:0004857
Vvi16g0599 520 Pfam Pectinesterase 208 505 IPR000070 GO:0030599|GO:0042545
Vvi16g0599 520 FunFam Pectinesterase 25 175 - -
Vvi16g0599 520 FunFam Pectinesterase 202 520 - -
Vvi16g0599 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 176 IPR035513 -
Vvi16g0599 520 Gene3D - 202 520 IPR012334 -
Vvi16g0599 520 SUPERFAMILY Pectin lyase-like 202 518 IPR011050 -
Vvi16g0599 520 NCBIfam pectinesterase inhibitor domain 8 174 IPR006501 GO:0004857
Vvi16g0599 520 SMART PMEI_2 25 172 IPR006501 GO:0004857
Vvi16g0599 520 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Vvi16g0599 520 PANTHER PECTINESTERASE 18 510 - -
Vvi16g0599 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 176 IPR035513 -
Vvi16g0599 520 CDD PMEI-like_3 32 177 - -
Vvi16g0599 520 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0599 Vvi-Chr16 12106596 12109136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0599 1 520 Carbohydrate Esterase AT2G45220 64.245 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0599 K01051 - vvi:100262077 1051.97