Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0598 ATGAATACCTTTGCACATGTTCCCCCTGGTTTTCGGTTCCATCCAACTGATGAAGAGCTCGTAGATTACTACCTCAGAAAAAAGGTTACTTCAAGAAGAATTGACCTAGATGTCATTAAGGATGTTGATCTCTATAAAATAGAGCCATGGGATCTTCAAGAACTTTGCAGAATAGGAACGGATGAGCAAAATGAATGGTACTTTTTTAGCCATAAAGATAAGAAGTATCCGACTGGGACTCGAACAAATAGGGCTACAGCGGCTGGATTTTGGAAAGCAACAGGAAGAGACAAAGCTATTTACTCTAAGCATGACTTGATTGGCATGAGGAAGACCTTAGTCTTTTACAAAGGTCGAGCCCCGAATGGTCAAAAATCAGATTGGATTATGCATGAATACCGACTTGAAACAGATGAGAATGGGACTCCTCAGGAAGAAGGTTGGGTTGTGTGCAGAGTGTTCAAGAAGAGAATAGCAACGGTGAGGAAAATGAGCGAGCATGAGTCACCATGTTGGTATGATGATCAAGTCTCGTTCATGCCGGAGTTGGAATCACCAAAACAGAACTCTCACTCTAATATGGCTTACCATCTCCCTTATTCCTGCAAGAAAGAGATAGACCTGCAGTACCAGATTCCACACGAGCAATTCCTCCAGCTCCCTCTCCTAGAGAGCCCAAAACTTTTGCAAACAGCAGCAACCACTGTAAGCTGCAACTCTATGGTTGCATACGGTATTGACATAAACCATGGAACCACTTTGCAGTCCCCTTCACTTACCCAGGATGAACATATTCGCCAACAAGCCCATGAACAAAACTTGCACCCCATCTATGTATACAATAATAACGAGCTGGCGGTGGATCAAGTCACAGATTGGCGAGTTCTCCACAAGTTTGTTGCTTCTCAGCTCAGCCATGAAGATGTTTCCAAGGAAAATAACTACTCATCGAATGCAGCCACTCTCTTTCATGCAGCTGAACACCCAAATTTGCTTGTCCAACATCTGAACAAAGAAGAAGCAGTGCCTGAGAATGCCTCAACATCGACTTCAAGTTGTCAAATTGAGCTGTGGAAATGA 1080 0.4333 MNTFAHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTDEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRIATVRKMSEHESPCWYDDQVSFMPELESPKQNSHSNMAYHLPYSCKKEIDLQYQIPHEQFLQLPLLESPKLLQTAATTVSCNSMVAYGIDINHGTTLQSPSLTQDEHIRQQAHEQNLHPIYVYNNNELAVDQVTDWRVLHKFVASQLSHEDVSKENNYSSNAATLFHAAEHPNLLVQHLNKEEAVPENASTSTSSCQIELWK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0598 359 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Vvi16g0598 359 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vvi16g0598 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 268 - -
Vvi16g0598 359 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vvi16g0598 359 FunFam NAC domain-containing protein 16 160 - -
Vvi16g0598 359 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0598 Vvi-Chr16 12087409 12089494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0598 1 359 NAC Transcription Factor Family AT1G12260 56.873 1.40e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi16g0598 NAM 3.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0598 - - vri:117933122 738.413