Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0595 ATGGATCTGAAGTCCAATCATTCTTCTCCTGTTCTTACTGATCCTCCACCTGTAAACAAGTCAAGATTTGGCATCCGTTCCAATTTGTTGCCATACTCTCCCCCAGGAGCAGCATTCTCTTCTACCCTGTTCCTAACCATTCCAAGGAAGAAGAATGGAGTACTGGATGATGTACGTTCCAGCAGTTGGCTGGATGCCATGAAATCCTCTTCTCCTACTCATAAGAAGATAACCAAGGATTTCAACACTGTGCTTGCATCAACTGACACTGATGTTACTTACCGCACCTGGCTGCTTAAGTATCCATCAGCACTTAAATCTTTTGAGCAAATCACGAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTATGCGTGCTACTGTGAGAAACGTGGCTAAGTTTTTCCCAACCGCAATAATTAGTGGAAGAAGTCGGGATAAGGTGTATAATTTTGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGGGATGGACATCATGGGCCCTGTCAGACACTCCATTTCTAATGACCATCCAAATTGTATTAGGTTAACTGACAAGCAGGGTAAGGAAGTTAATTTGTTCCAGCCTGCGAGTGAATTTTTACCCATGATCGATGAGGTTTTTAGATCCCTTGTCAGGTGTACTAAAGAAATCAAAGGAGCAGAAGTAGAAAATAATAAGTTCTGTGTCTCTGTACATTACCGCAATGTGGATGAGAAGTATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAGGTTTTAGAGGTCCGACCTGTGATTGACTGGGATAAGGGAAAAGCTGTTGAGTTTTTACTTGAGTCACTTGGGCTGAATAATTCTGATGATGTACTGCCAATTTATGTTGGAGATGACCGGACAGACGAAGATGCCTTCAAGTTTTTGAGAGATGGAAAACGTGGTTATGGCATTTTAGTGTCTTCTGTGCCCAAGGAAAGCAATGCATTTTACTCACTCAGGGACCCATTAGAGGTCATGGAATTTCTCAAGTTACTGGTGATGTGGAAGAAGTCAAGTGCACTATAA 1158 0.4275 MDLKSNHSSPVLTDPPPVNKSRFGIRSNLLPYSPPGAAFSSTLFLTIPRKKNGVLDDVRSSSWLDAMKSSSPTHKKITKDFNTVLASTDTDVTYRTWLLKYPSALKSFEQITNYAKGKRIALFLDYDGTLSPIVDNPDRAFMSDCMRATVRNVAKFFPTAIISGRSRDKVYNFVGLTELYYAGSHGMDIMGPVRHSISNDHPNCIRLTDKQGKEVNLFQPASEFLPMIDEVFRSLVRCTKEIKGAEVENNKFCVSVHYRNVDEKYWKTIAQCVDDILKDYPRLRLTHGRKVLEVRPVIDWDKGKAVEFLLESLGLNNSDDVLPIYVGDDRTDEDAFKFLRDGKRGYGILVSSVPKESNAFYSLRDPLEVMEFLKLLVMWKKSSAL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0595 385 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 30 384 IPR044651 GO:0004805|GO:0005992
Vvi16g0595 385 Gene3D - 120 209 IPR023214 -
Vvi16g0595 385 Gene3D - 226 384 IPR023214 -
Vvi16g0595 385 Pfam Trehalose-phosphatase 123 366 IPR003337 GO:0003824|GO:0005992
Vvi16g0595 385 SUPERFAMILY HAD-like 121 379 IPR036412 -
Vvi16g0595 385 NCBIfam HAD-IIB family hydrolase 122 341 IPR006379 -
Vvi16g0595 385 FunFam Trehalose 6-phosphate phosphatase 120 208 - -
Vvi16g0595 385 NCBIfam trehalose-phosphatase 117 377 IPR003337 GO:0003824|GO:0005992
Vvi16g0595 385 CDD HAD_TPP 121 371 - -
Vvi16g0595 385 FunFam Trehalose 6-phosphate phosphatase 227 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0595 Vvi-Chr16 12003368 12005651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0595 114 376 Trehalose Biosynthesis Gene Families AT1G70290 26.619 8.59e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0595 K01087 - vvi:100251837 781.171