Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0588 ATGGGTGCGAGTTACTTATTGGTCTCTGCGGCCTGCACGGTATTCAGCTTTGTGGGTCTGCAATGGTGGACAGAGCAATCGTTACACAGACTAAAGTCTGATGGGTTAATCAGTGATAACTATATCCACTCCGGGAATGCAAGCCGTGTGCTAGATCTGCTTTTGAGTTCTCATGCAACAATTGCTTTGCTGGTCAATTTTGCGCTCAATATATTTGTCCTGCTCATATTGTGTCTTAAGACTATATTCTTTGCAGAGTTGTATCCTTCTGAAACTCGAAAGTTAGTGGGGCGGCTTATCAATTATGTTATTTACAAGGGAACATTTCTTCCTCTGGTTGTCCCATCAACAATATTTCAAGCAGGCCTGTGGTCAATGTGGCTGACTATTCTTTGTTCTTTAAAGATGTTTCAAGCTTTAGCTAGAGATCGACTTGAACGTTTGAATGCATCTCCATCTGCTACACCATGGACATATTTTCGTGTGTTTTCAGTACTATTGTTGGTCCTGTCTGTTGATTTGTTCTGGATATGGCTGTGTCTGGTGATATATAGAACGTTAAGTTCACCTATGTTCCTGTTGTTGTTTTTTGAGCCTTGGAGTATTGCTTTTGAGACACTACAGGCTATTGTGGTTCATGGATTTCAGTTGATTGATATATGGCTCCATGATTCAGAAGGGAACAGCATAAATTGCCGGGGATCCAAAATTTTTCATATATCACCAGTAGGTTCATTGTTGGAATGGAAAGGCATTCTTATCCGGAACTTGGGTTTTCTCTTAGACATGGCAACTTTGTTAATGGCTCTTGGTCATTACTTACATATTTGGTGGCTTCATGGCATGGCATTCCATCTTGTAGATGCTATCCTTTTTCTAAATATACGTGCCTTGCTGAGCGCAATTGTAAAGCGTGTCAAGGGATTCATTAAATTGAGGATGGCTTTAGGTACCCTGCATGCGGCACTTCCAGATGCAACATCTGAAGAGCTACAAGCATATGATGATGAATGCGCAATCTGTAGGGAACCAATGGCTAAGGCTAAAAAACTGCATTGCAATCACCTTTTCCATCTTGCATGCTTGAGATCTTGGTTGGATCAAGGTCTGACAGAGATTTATTCATGCCCCACATGTCGAAAGCCACTTTTCACAGGCAGATCCAGGGATGATGCTAACCCCCGCACTGGAGAAGTATCAAGTGATGAGCAGTTGGCCCGTCAAATAAGTTCAGGACTTGATCGACCAGGTCCTGCTGCACATGCATTACCTGCAGGAGTCTTCCCCAATCAGACACATGATGCTTTAGAAATCAGTGCTTGGAGGACTGGATCCAAGTTGGTTGCATACTTGGCCGAACCAGGGTCTTGA 1371 0.4289 MGASYLLVSAACTVFSFVGLQWWTEQSLHRLKSDGLISDNYIHSGNASRVLDLLLSSHATIALLVNFALNIFVLLILCLKTIFFAELYPSETRKLVGRLINYVIYKGTFLPLVVPSTIFQAGLWSMWLTILCSLKMFQALARDRLERLNASPSATPWTYFRVFSVLLLVLSVDLFWIWLCLVIYRTLSSPMFLLLFFEPWSIAFETLQAIVVHGFQLIDIWLHDSEGNSINCRGSKIFHISPVGSLLEWKGILIRNLGFLLDMATLLMALGHYLHIWWLHGMAFHLVDAILFLNIRALLSAIVKRVKGFIKLRMALGTLHAALPDATSEELQAYDDECAICREPMAKAKKLHCNHLFHLACLRSWLDQGLTEIYSCPTCRKPLFTGRSRDDANPRTGEVSSDEQLARQISSGLDRPGPAAHALPAGVFPNQTHDALEISAWRTGSKLVAYLAEPGS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0588 456 Pfam Ring finger domain 336 380 IPR001841 -
Vvi16g0588 456 MobiDBLite consensus disorder prediction 387 406 - -
Vvi16g0588 456 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Vvi16g0588 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 4 409 - -
Vvi16g0588 456 SMART ring_2 338 379 IPR001841 -
Vvi16g0588 456 SUPERFAMILY RING/U-box 322 386 - -
Vvi16g0588 456 CDD RING-H2_AMFR 336 383 - -
Vvi16g0588 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 390 IPR013083 -
Vvi16g0588 456 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0588 Vvi-Chr16 11900142 11912172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0588 54 404 C3H Transcription Factor Family AT3G16090 27.171 3.75e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0588 K10636 - vvi:100241573 884.019