Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0585 ATGGCTCACAGCACGAAGAGAGTCTATCCTCCTTTTCCAAGGGTTACTGTGGAGCAAGTGGTGTCAGTAGTGAAGGAGCTATTCAGAGACCATGAAGAACTGATTGTCGGTTTCAACGACTACTTGCCTGAAGAACACAGGATTAGTGTTCCAGTCCAAGACATCTGA 168 0.4643 MAHSTKRVYPPFPRVTVEQVVSVVKELFRDHEELIVGFNDYLPEEHRISVPVQDI* 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0585 55 Pfam Paired amphipathic helix repeat 17 42 IPR003822 GO:0006355
Vvi16g0585 55 Gene3D Paired amphipathic helix 2 45 IPR036600 GO:0006355
Vvi16g0585 55 SUPERFAMILY PAH2 domain 14 45 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0585 Vvi-Chr16 11804831 11807022 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0585 15 54 WRKY Transcription Factor Family AT4G12020 37.500 3.57e-06 40.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi16g0585 PAH 6.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0585 - - mtr:MTR_4g133300 52.373