Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0582 ATGGCTCACAGCACGAAGAGAGTCTATCCTCCTTTTCCAAGGGTGAGATCAGCAGCCCTTTTAGAGGCAGCAATATATCTAAGATCAGTAAAGACTGCATTAAGGGGTGATCAAGAGAAATGTGCTTCATTCACAAAACTCATGGAAGACTACTTGCACCATAGGGTTACTGTGGAGCAAGTGGTGTCAGTAGTGAAGGAGCTATTCAGAGACCACGAAGGACTGATTGTCGGTTTCAACGACTACTTGCCTGAAGAACACAGGATTAGTGTTCCAGTCCAAGACATCTGA 291 0.4502 MAHSTKRVYPPFPRVRSAALLEAAIYLRSVKTALRGDQEKCASFTKLMEDYLHHRVTVEQVVSVVKELFRDHEGLIVGFNDYLPEEHRISVPVQDI* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0582 96 ProSiteProfiles PAH domain profile. 16 86 IPR003822 GO:0006355
Vvi16g0582 96 PANTHER SIN3B-RELATED 22 92 IPR039774 GO:0003714
Vvi16g0582 96 Gene3D Paired amphipathic helix 22 84 IPR036600 GO:0006355
Vvi16g0582 96 Pfam Paired amphipathic helix repeat 42 83 IPR003822 GO:0006355
Vvi16g0582 96 SUPERFAMILY PAH2 domain 20 86 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0582 Vvi-Chr16 11754965 11757236 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0582 22 95 WRKY Transcription Factor Family AT4G12020 35.135 1.41e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi16g0582 PAH 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0582 - K04963 mtr:MTR_4g133300 64.6994