Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0562 ATGGAAAATTTAAGAGAGCTTTCTTTAGATAGAACTGCCATAAAAGAGCTACCAGCATCAATTGAACAACTAGGAGGGCTTCAACATTTGCACCTGTCAAATTGCAACAACCTTGTGAATCTTCCGGAAAGCATTTGTAATTTGAGATTTCTCAAAAATCTCAATGTTAATCTCTGTTCAAAAATTGAGAAATTTCCTCAGAACCTGGGGAGTTTGCAATGTTTAGAGCTTCTGGGAGCTGGAGGTTTAGATTCCAATCGAGTTCTAGTAGCAATTCAGAGTGATGATTGCCACATGTCATCATGGGAAGCATTAAATCGAAGCATCAACTATTTCAGTAGCATAATTCCTATCAGCATCATTCAACTTTCTAAATTGAGAGTCCTCCACTTGAGTCATTGCCAGAAGCTTCTACAAATTCCAGAACTTCCACCAAGTTTACGAACTCTTGATGTCCACGCCTGCCCATACCTGGAAACATTATCAAGGCCGTCAAGTCTACTTGGTTTTTCTTTGTTCATATGCTTCAAATCAGCAATTGAGGAGTTTGAATACGGGTCCCATTGGAGCAAGGGAATCTAA 582 0.3935 MENLRELSLDRTAIKELPASIEQLGGLQHLHLSNCNNLVNLPESICNLRFLKNLNVNLCSKIEKFPQNLGSLQCLELLGAGGLDSNRVLVAIQSDDCHMSSWEALNRSINYFSSIIPISIIQLSKLRVLHLSHCQKLLQIPELPPSLRTLDVHACPYLETLSRPSSLLGFSLFICFKSAIEEFEYGSHWSKGI* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0562 193 Gene3D Ribonuclease Inhibitor 1 182 IPR032675 -
Vvi16g0562 193 SUPERFAMILY L domain-like 2 161 - -
Vvi16g0562 193 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0562 Vvi-Chr16 11340256 11340917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0562 3 78 WRKY Transcription Factor Family AT4G12020 40.789 3.56e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0562 - - vvi:109124221 372.859