Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0560 ATGGACCTAAAGCCTTCAGACATTCTTCCTAAGGACGATATGAGAGCTAAGGTTTCTGATTGTGGTCTTGCGCGACTTGTTCCAGATGAGAAGAGCTTAATTGAAACAAGAATTGTCGATACTTTTAGATGCTTGGCGTTGAAGTATGTAGCGACTGGTCGAGTGACTACTAAAGTGGACGCCACTATTTTTGAGGTGATTTTGACTGAGCTTATCACCGAGAGAAAAACACTAGATGAGAGCCAGCCCGAGGAGAACATGCGCTTAGTGACATGGTTTAAAAGAATGCACATTAATATGGACACTTTCAGAAAAGCACCCTATTGA 327 0.422 MDLKPSDILPKDDMRAKVSDCGLARLVPDEKSLIETRIVDTFRCLALKYVATGRVTTKVDATIFEVILTELITERKTLDESQPEENMRLVTWFKRMHINMDTFRKAPY* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0560 108 Gene3D Transferase(Phosphotransferase) domain 1 1 106 - -
Vvi16g0560 108 SUPERFAMILY Protein kinase-like (PK-like) 2 101 IPR011009 -
Vvi16g0560 108 Pfam Protein tyrosine and serine/threonine kinase 2 99 IPR001245 GO:0004672|GO:0006468
Vvi16g0560 108 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0560 108 PANTHER OSJNBA0070M12.3 PROTEIN 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0560 Vvi-Chr16 11289266 11289592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0560 2 92 Trihelix Transcription Factor Family AT1G68690 47.253 1.99e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vvi16g0560 PK_Tyr_Ser-Thr 7.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0560 - K00924 vvi:100265723 144.436