Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0559 ATGGATGATCTGCCTCTATGGTTAGATGTGAATGAAGATCCAAGTAATGATTATTTTGTGGAAAACCTTTGGCATCATCCTAATCAACTGTCAGAAGAAATGGTGCACATGAGAGACATATTCCTCTTTTTAACAGATTCGTCAAAGCTTTTTTCCTCTGAGGGTGTGGCTTCACCTCGAGAGCATTCCTGGAAAGGTAGATTGGACAAGAAGTACAGGAACCTTAAAACTGGCACTAGTGTTGCCATTAAGATAATTGATAAAGAGAAGAATTTGAAGGTTGGGATGGTGGATCAGATTAAGCGAGAGATTTCTGTAATGAGACTGGTTAGACACCCAAATGTGGTAAAGCTTTATGAGGTTATGGCCAGCAAAATGAAGATTTACTTTGTCATGGAATATGCTAAAGGAAGGGAGCTCTTCAACAAGGTAGCCAAAGGAAAGCTCAAGGAGGATGTTGTAAGGAAATATTTTCAACAGCTGATCAGTGCAGTTGATTTCTATCACAATAGAGGTGTTTATCATCGGGATTGA 534 0.3933 MDDLPLWLDVNEDPSNDYFVENLWHHPNQLSEEMVHMRDIFLFLTDSSKLFSSEGVASPREHSWKGRLDKKYRNLKTGTSVAIKIIDKEKNLKVGMVDQIKREISVMRLVRHPNVVKLYEVMASKMKIYFVMEYAKGRELFNKVAKGKLKEDVVRKYFQQLISAVDFYHNRGVYHRD* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0559 177 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 70 177 - -
Vvi16g0559 177 SUPERFAMILY Protein kinase-like (PK-like) 71 177 IPR011009 -
Vvi16g0559 177 ProSiteProfiles Protein kinase domain profile. 57 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0559 177 Pfam Protein kinase domain 71 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0559 177 Gene3D Transferase(Phosphotransferase) domain 1 70 177 - -
Vvi16g0559 177 SMART serkin_6 70 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0559 Vvi-Chr16 11280909 11281573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0559 65 177 CBL-interacting serine-threonine protein kinases AT5G45820 72.174 1.85e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi16g0559 Pkinase 4.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0559 K07198 - vvi:100243133 191.815