Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0557 ATGGCTCCCAACTCGCTGTCAGTCCGCTTGGAAGAATCCTTTACCCGCAACGCCCTCAGATCCTACTTGGCCGAGTTCATCTCCACTTTCATCTTCGTTTTTGCCGCTGTCGGATCCGCTATGTCTTCCAGGAAACTGATGCCGGATGCCACGTCTGATCCATCTAGTCTGCTTGTGGTTGCACTGGCAAATGCGTTTGCATTGTCGTCGGCAGTGTATATTGCTGCAGGGATCTCGGGAGGACATGTGAATCCGGCTGTCACGTTCGGATTGGCGGTGGGAGGCCACGTCAGCATCCCCACTGCCATGTTGTACTGGATTTCACAGATGCTGGGTGCCACCATGGCTTGCCTGTTCCTGAGAGTCACCACTGTTGGTCAGCACGTTCCGACCCATGCAATAGCGGAGGAAATGACCGGGTTCGGAGCATCCGTATTAGAGGGCGTCCTGACATTCGCACTTGTGTACACGGTCTACGCTGCAGGTGACCCGAGGCGAGGCCCACTGGGATCCATCGGACCCCTTGCCATCGGGCTAATAGAGGGAGCCAATGTGCTGGCGGCCGGGCCATTCACGGGAGGGTCTATGAACCCGGCATCCTCATTCGGGTCAGCCCTAGTTGGAGGCACCTTCAAGAACCAGGCGGTTTACTGGGTGGGACCCTTGATTGGTGGCGCACTGGCTGGGCTGCTGTATGAAAATGTGGTTTTCCCTCCTCAAGACACTGCAATTTCTCAAGTTGGGGTGTGA 750 0.5627 MAPNSLSVRLEESFTRNALRSYLAEFISTFIFVFAAVGSAMSSRKLMPDATSDPSSLLVVALANAFALSSAVYIAAGISGGHVNPAVTFGLAVGGHVSIPTAMLYWISQMLGATMACLFLRVTTVGQHVPTHAIAEEMTGFGASVLEGVLTFALVYTVYAAGDPRRGPLGSIGPLAIGLIEGANVLAAGPFTGGSMNPASSFGSALVGGTFKNQAVYWVGPLIGGALAGLLYENVVFPPQDTAISQVGV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0557 249 ProSitePatterns MIP family signature. 82 90 IPR022357 -
Vvi16g0557 249 PANTHER AQUAPORIN-8 10 238 IPR034294 -
Vvi16g0557 249 FunFam Probable aquaporin TIP5-1 4 244 - -
Vvi16g0557 249 Pfam Major intrinsic protein 17 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0557 249 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0557 249 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0557 249 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0557 249 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0557 249 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0557 249 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0557 249 SUPERFAMILY Aquaporin-like 12 241 IPR023271 -
Vvi16g0557 249 Gene3D Glycerol uptake facilitator protein. 5 245 IPR023271 -
Vvi16g0557 249 CDD MIP 20 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0557 Vvi-Chr16 11248043 11248951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0557 1 248 Major Intrinsic Protein MIP AT3G47440 63.710 4.75e-111 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0557 K09873 - vvi:100246683 464.922