Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g0553 | ATGGTCTCAAAGTGTTTGACAAAAACAACATACCATTCATCAGATCAAAACCAGGAGGAAGCAATGTGCACAATATGCCTTGAGGAATACAAAAGCAAGGAAGAAGTAGGGAGAATGAAGAACTGTGGTCATGAGTACCATGTGGGCTGCATCAGGAAATGGTTGTCAATGAAGAATTCCTGCCCCATTTGCAAAGCACCTGCTCTTGCAAATGGTTTGAAGGAGGAATGA | 231 | 0.4242 | MVSKCLTKTTYHSSDQNQEEAMCTICLEEYKSKEEVGRMKNCGHEYHVGCIRKWLSMKNSCPICKAPALANGLKEE* | 77 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g0553 | 76 | SMART | ring_2 | 23 | 64 | IPR001841 | - | |
Vvi16g0553 | 76 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 71 | IPR013083 | - | |
Vvi16g0553 | 76 | Pfam | Ring finger domain | 22 | 65 | IPR001841 | - | |
Vvi16g0553 | 76 | SUPERFAMILY | RING/U-box | 13 | 68 | - | - | |
Vvi16g0553 | 76 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 2 | 69 | IPR045191 | GO:0061630 | |
Vvi16g0553 | 76 | FunFam | E3 ubiquitin-protein ligase MBR2 isoform A | 1 | 69 | - | - | |
Vvi16g0553 | 76 | ProSiteProfiles | Zinc finger RING-type profile. | 23 | 65 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g0553 | Vvi-Chr16 | 11163492 | 11164324 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g0553 | 2 | 74 | C3H Transcription Factor Family | AT2G37150 | 61.644 | 6.54e-21 | 82.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g0553 | - | - | vvi:100249661 | 157.147 |