Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0553 ATGGTCTCAAAGTGTTTGACAAAAACAACATACCATTCATCAGATCAAAACCAGGAGGAAGCAATGTGCACAATATGCCTTGAGGAATACAAAAGCAAGGAAGAAGTAGGGAGAATGAAGAACTGTGGTCATGAGTACCATGTGGGCTGCATCAGGAAATGGTTGTCAATGAAGAATTCCTGCCCCATTTGCAAAGCACCTGCTCTTGCAAATGGTTTGAAGGAGGAATGA 231 0.4242 MVSKCLTKTTYHSSDQNQEEAMCTICLEEYKSKEEVGRMKNCGHEYHVGCIRKWLSMKNSCPICKAPALANGLKEE* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0553 76 SMART ring_2 23 64 IPR001841 -
Vvi16g0553 76 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Vvi16g0553 76 Pfam Ring finger domain 22 65 IPR001841 -
Vvi16g0553 76 SUPERFAMILY RING/U-box 13 68 - -
Vvi16g0553 76 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 69 IPR045191 GO:0061630
Vvi16g0553 76 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 1 69 - -
Vvi16g0553 76 ProSiteProfiles Zinc finger RING-type profile. 23 65 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0553 Vvi-Chr16 11163492 11164324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0553 2 74 C3H Transcription Factor Family AT2G37150 61.644 6.54e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0553 - - vvi:100249661 157.147