Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0533 ATGTACATAAAGGAGATCTGCTTGGAGGGCTTCAAATCCTACGCCACTCGCACGGTCGTCCCTGGCTTCGATCCCTACTTCAATGCCATCACGGGCCTTAATGGTTCCGGCAAGTCCAACATTCTTGACTCCATTTGCTTTGTGTTGGGCATTACCAATTTGCAGCAGGTTCGGGCTTCCAATCTCCAGGAGCTGGTCTATAAGCAAGGCCAAGCTGGGATTACTAAGGCCACCGTGTCGGTGGTGTTCGATAATTCTGATAGGAGTCGGAGTCCGCTCGGTTACCAGGATTGTCCAGAAATTACGGTAACACGGCAGATTGTGGTTGGTGGAAGGAACAAATACCTGATAAATGGACACCTTGCCCAGCCTAGTCGAGTTCAAAACCTTTTCCACTCTGTACAGCTCAATGTTAACAACCCACATTTTCTCATAATGCAAGGGCGCATCACCAAGGTCTTAAACATGAAACCTCCTGAGATTTTATCTATGCTTGAAGAGGCTGCTGGGACAAGAATGTATGAAACAAAGAAAGAGGCTGCTCTGAAAACACTTGAGAAGAAGCAGAGCAAAGTTGATGAGATTGATAAGCTTCTTGACCAGGAGATATTGCCTGCTTTGGAGAAGTTGAGGAAAGAACGGATGCAGTATATGCAATGGGCTAATGGCAATGCAGAATTAGATCGACTTAAAAGGTTCTGCATTGCCTATGAATTTGTTCAGGCAGAGAAGATTAGGGACAGTGCAGTCTCTGGGGTTGAACAAGTAAAGACGAAGATTGCTGATATTGAAGACAGTCACAAAAGGATGCAGGTGGAAATACAGGAAATGGAGACACAAGTGTCAAACTTGACTGCTGAAAAGGAGGCAAGTATGGGTGGAGAGGTAAAAGTTTTATCAGAGAATGTAGATGCTCTTTCTCGTGAGCTTGTGAAGCAAGCATCAGTACTGAAAAATCAAGAAGACACTCTCAAGAGTGAAAAAGAGAATGCTGCAAAGATTGTTAGAGGTATTGAAGATTTAAAACAGTCTGTTGAAGAGAGGGCCTCTGCTGTCAAAAGGGCTGAAGATGGGGCGGCTGATCTAAAACAAAGAGTTGAGGAACTTTCTAAGAATTTGGAAGAGTGTGAAAGAGAGTACCAGGGTGTTCTAGCTGGTAAGAGCAGTGGAAGTGAGGAAAAATGCCTTGAAGATCAACTAGCTGATGCTAAAGTAGCAGTTGGGAGTGCAGAAACAGAATTGAAACAGCTCAACACAAAAATAACTCATTGTGAAAAAGATCTGAAAGAGAAAACAAATGAGTTAATATCTAAGCATGAAGAAGCTGTTTCTGTTGAGAATGAGCTTAATGTGAGGAGAAAGGATGTGGAAAATATCAAAATGGCATTGGAATCTCTTACATACAAAGAAGGTCAGATGGAAGCTTTACAAAAGGAACGTGCTCTTGAGCTGGGCATGGTGCAGGAGTTAAAAGATGAGACAAGGATTCTTTCTGCTCAACTGGGAAATGTTCAGTTTACATACCATGACCCATTGAAGAATTTTGATAGGTCAAGGGTGAAAGGTGTGGTTGCAAAACTAATTAAAGTGAAGGATAGCTCCACAATGACTGCCTTAGAGGTTGCTGCTGGTGGAAAGTTGTTTAATGTTGTTGTAGACACAGAAAACACTGGAAAACTACTGCTTCAAAATGGTGATCTCCGGAGAAGAGTAACGATCATTCCGTTGAACAAAATTCAATCCCATACTGTTCCTTTAAGAGTTCAAAAAGAAGCTTCTAGATTGGTTGGTAAGGAGAATGCAGAACTGGCTCTTTCTTTGGTTGGATATGATGAGGAACTGAAGAGTGCAATGGAATATGTGTTTGGTTCAACCTTTGTTTGTAAAAGGATTGATGCTGCAAAGGAGGTTGCTTTTAACAGGGATATCTCCACTCCAAGTGTTACTCTTGATGGTGATATATTTCAACCAAGTGGTCTTCTGACTGGTGGTAGTCGCAAAGGTGGTGGTGATCTATTGAGGCAACTTCATGCTTTGGCAGAGGCTGAATCAAAACTTTCAACTCATCAGCAGAAGTTATCAGAAATTGAAGCAAAGATCGCCGACCTCATGCCTCTTCAGAAGAGGTTCATGGACCTTAAAGCGCGGTTGGAACTTAAGTCGTATGACCTTTCATTATTTCAGAACAGGGCTGAGCAAAATGAGCATCATAAGCTCAGTGAACTGGTTAAAAGGATTGAGCAGGAGCTTGGGGAATCAAAGTCAGCTGCTAGAGAAAAGCAACTTCTGCTTGAAAACTGTATAAATACAGTGTCACTGCTTGAGAAGTCGATCAAAGAGCATGCTACTAATCGGGCTGGCAGGCTTAAAGATTTAGAGAAGAAGGCAAAGGCTTTAAAGTCTCAAATGACATCAGCTTCCAAGGACCTCAAGAGGCATGAGAATGAAAAAGAGAGGCTTATTATGGAAATGGAAGCAGTCATAGAGGAACGTGCATCTTTGGAGAGTCAACTAACATGTTTGAGAGGACAAATTGACAGTCTCACATCAGAAGTAGATCAACTTAAGAACAAGGTTTCTTCAGTAAAGAACAATCATGATCAGGCTCAATCTGAGCTCAATTTGATCCGTTTGAAGATGAAGGAATGTGATTCTCAAATTAGTTGCATTCTCAAGGAGCAGGAGAAGCTTCAACACAAACTCAGTGAGATGAATATTGAAAGGAAGAAGCTGGAAAATGAGGTAAAACGAATGGAGATGGAACAAAAAGATTGCTCTTCAAAGGTAGAAAAGTTAATTGAGAAGCATGCCTGGATTGCATCAGAAAAGCAGCTTTTCGGAAGAAGTGGAACTGATTATGATTTTGCATGCCGTGATCCTAGTAAAGCCAGGGCTGAACTTGACAAACTGCAAACTGAACAATCAGGCCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGAATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCTGGAACCTCCTGAAGGATGCAGTTTCTTGGATGGTCTTGAGGTTCGTGTTGCATTTGGAAGTGTTTGGAAACAGTCCTTGTCAGAATTGAGTGGAGGGCAACGTTCACTGCTTGCACTCTCTCTAATCTTGGCATTGCTCCTCTTCAAACCAGCTCCACTTTATATTCTGGATGAGGTCGATGCTGCCCTTGATTTAAGTCACACTCAAAACATTGGAAGAATGATTAAATCCCATTTCCCACATTCCCAGTTCATTGTGGTTTCTCTTAAAGAAGGCATGTTCAATAATGCCAATGTTCTTTTCCGGACAAAATTTGTGGATGGTGTTTCCACAGTTCAGAGAACTGTTGCAGCTAAGCAGAACAAGTGA 3531 0.4163 MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNSDRSRSPLGYQDCPEITVTRQIVVGGRNKYLINGHLAQPSRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEIDKLLDQEILPALEKLRKERMQYMQWANGNAELDRLKRFCIAYEFVQAEKIRDSAVSGVEQVKTKIADIEDSHKRMQVEIQEMETQVSNLTAEKEASMGGEVKVLSENVDALSRELVKQASVLKNQEDTLKSEKENAAKIVRGIEDLKQSVEERASAVKRAEDGAADLKQRVEELSKNLEECEREYQGVLAGKSSGSEEKCLEDQLADAKVAVGSAETELKQLNTKITHCEKDLKEKTNELISKHEEAVSVENELNVRRKDVENIKMALESLTYKEGQMEALQKERALELGMVQELKDETRILSAQLGNVQFTYHDPLKNFDRSRVKGVVAKLIKVKDSSTMTALEVAAGGKLFNVVVDTENTGKLLLQNGDLRRRVTIIPLNKIQSHTVPLRVQKEASRLVGKENAELALSLVGYDEELKSAMEYVFGSTFVCKRIDAAKEVAFNRDISTPSVTLDGDIFQPSGLLTGGSRKGGGDLLRQLHALAEAESKLSTHQQKLSEIEAKIADLMPLQKRFMDLKARLELKSYDLSLFQNRAEQNEHHKLSELVKRIEQELGESKSAAREKQLLLENCINTVSLLEKSIKEHATNRAGRLKDLEKKAKALKSQMTSASKDLKRHENEKERLIMEMEAVIEERASLESQLTCLRGQIDSLTSEVDQLKNKVSSVKNNHDQAQSELNLIRLKMKECDSQISCILKEQEKLQHKLSEMNIERKKLENEVKRMEMEQKDCSSKVEKLIEKHAWIASEKQLFGRSGTDYDFACRDPSKARAELDKLQTEQSGLEKRVNKKVMAMFEKAEDEYNELISKKSIIENDKSKIKMVIEELDEKKKETLKVTWTKVNKDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKSHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQNK* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0533 1176 Coils Coil 400 448 - -
Vvi16g0533 1176 Coils Coil 253 287 - -
Vvi16g0533 1176 Gene3D - 800 892 - -
Vvi16g0533 1176 Coils Coil 729 749 - -
Vvi16g0533 1176 Gene3D - 592 666 - -
Vvi16g0533 1176 Coils Coil 982 1026 - -
Vvi16g0533 1176 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi16g0533 1176 Gene3D - 1 202 IPR027417 -
Vvi16g0533 1176 Pfam RecF/RecN/SMC N terminal domain 2 517 IPR003395 -
Vvi16g0533 1176 Coils Coil 894 935 - -
Vvi16g0533 1176 Gene3D - 995 1175 IPR027417 -
Vvi16g0533 1176 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Vvi16g0533 1176 Coils Coil 352 386 - -
Vvi16g0533 1176 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi16g0533 1176 Pfam RecF/RecN/SMC N terminal domain 872 1161 IPR003395 -
Vvi16g0533 1176 PIRSF SMC 1 1156 IPR024704 GO:0005524|GO:0016887
Vvi16g0533 1176 SUPERFAMILY Smc hinge domain 488 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi16g0533 1176 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1174 - -
Vvi16g0533 1176 FunFam Structural maintenance of chromosomes 2 995 1174 - -
Vvi16g0533 1176 FunFam Structural maintenance of chromosomes 2 518 583 - -
Vvi16g0533 1176 Coils Coil 473 493 - -
Vvi16g0533 1176 Coils Coil 789 872 - -
Vvi16g0533 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Vvi16g0533 1176 FunFam Structural maintenance of chromosomes 2 1 202 - -
Vvi16g0533 1176 Coils Coil 679 699 - -
Vvi16g0533 1176 Gene3D - 444 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0533 Vvi-Chr16 10692048 10716375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0533 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 1.50e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0533 K06674 - vvi:100245029 2216.42