Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0521 ATGGAAGGGAAGCTGGTGCGTCTGCAGTTTCCTTTGCTGGTGATTTCTTGCCTTGTATTCCAGCTCCGTGCCTCAGATGCTATCTTGCATGAATCACGGCGGTCACTTGAGTCTAGGAAGGAAGCATTGTGCCCTCCTGATTGGATCACTGGCCCAGATAAGAATAAGTGCTTTAGGTATATAGGAAACCCTCAATCATGGGATGTATCGGAGGCCTACTGTAAAAGTTTAGGGGGACACTTGGCAGCACTGACATCATTCCAAGAACTAAGCTCTGTTCAAAATCTATGTGGTGAGAGCAACAATGGCTGCTGGGTTGGAGGGAGAGGTGTCAACTCTACTTTTGGTGCTGGTTGGAAGTGGTCTGACAATACATCACATTGGAATGAATCAATCTTTCCCAATTGCACCAACTCTTCATGCCACATAAAAAATTCAGTTGATTCTTGTACACTGGTGACAAATGGATCCACTTTTCTCATTGGTGAGAGATGCAACATGTCTCATGCTTCTATATGCATGATTGATATAGAGAACAAATGTTACCACATGCACTGCCACAAGGAATATCTTATTATCCTTGCAGTTGTTAGTGGGTTGATCCTCAGCACGACATTAGCTGTTGTGATTTGGCTCCTTGCATATAGGCGTAGCAAGAGGCGTAGAAGATCTCGCAAACTCTCTAATCCAGCAGCATCTGCATTAGTTCCCCCTTCATGGAAGGTTTTCACGAATGAGGAACTGAGGTCAATTACAAAGAATTTCAGTGAAGGAAACCGGCTTCTTGGAGATGCCAAAACAGGTGGCACGTATAGCGGGCTTCTACCTGATGGATCAAGGGTGGCGGTTAAAAGGCTGAAGAGGTCTACTTTCCAGAGGAAAAAGGAGTTCTATTCTGAGATTGGAAGGGTTGCTAGGCTACACCATCCAAATTTGGTTGCTGTGAAAGGGTGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAGTTTATAATCAATGGACCCTTGGACAGGTGGCTACACCACATACCAAGGGGAGGCAGAAGTTTGGATTGGGCCATGAGAATGAAAATTGCCACAACTCTTGCACAAGGAATTGCGTTTCTGCATGACAAGGTGAAGCCACATGTTGTACATCGGGATATACGAGCAAGTAATGTACTGCTTGATGAAGAGTTTGGTGCACACCTAATGGGGGTTGGCCTCTCAAAGTTTGTTTCTTGGGAAGTGATGCATCAGGGGACAGTAATGGCCGGTGGGACGTATGGATACCTTGCTCCAGAATTTGTGTACAGAAATGAGCTTACAACCAAAAGTGATGTTTACAGTTTTGGAGTGCTGCTGCTTGAAATTGTGAGTGGACGTAGGCCTGCACAGGCAGTTGACTCAGTAGGTTGGCAAAGTATATTTGAATGGGCCACACCTCTGGTGCAGTCTCACCGCTATCCCGAGCTTTTGGACCCTCTCATATCTTCTTCTTCTGCTGATATTCCAGAAGCTGGTGTCATTCAGAAGGTAGTGGACCTTGTGTATGCCTGCACACAGCATGTCCCATCTATGCGTCCCAGAATGTCCCACGTCGTCCATCAACTGCAACAGTTGGCTCAGCCACCTATTGCCAAGTAA 1629 0.4604 MEGKLVRLQFPLLVISCLVFQLRASDAILHESRRSLESRKEALCPPDWITGPDKNKCFRYIGNPQSWDVSEAYCKSLGGHLAALTSFQELSSVQNLCGESNNGCWVGGRGVNSTFGAGWKWSDNTSHWNESIFPNCTNSSCHIKNSVDSCTLVTNGSTFLIGERCNMSHASICMIDIENKCYHMHCHKEYLIILAVVSGLILSTTLAVVIWLLAYRRSKRRRRSRKLSNPAASALVPPSWKVFTNEELRSITKNFSEGNRLLGDAKTGGTYSGLLPDGSRVAVKRLKRSTFQRKKEFYSEIGRVARLHHPNLVAVKGCCYDHGDRYIVYEFIINGPLDRWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKFVSWEVMHQGTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQSHRYPELLDPLISSSSADIPEAGVIQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAQPPIAK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0521 542 Pfam Lectin C-type domain 64 174 IPR001304 -
Vvi16g0521 542 ProSitePatterns Tyrosine protein kinases specific active-site signature. 378 390 IPR008266 GO:0004672|GO:0006468
Vvi16g0521 542 Gene3D Transferase(Phosphotransferase) domain 1 332 537 - -
Vvi16g0521 542 ProSiteProfiles C-type lectin domain profile. 53 174 IPR001304 -
Vvi16g0521 542 Pfam Protein tyrosine and serine/threonine kinase 262 532 IPR001245 GO:0004672|GO:0006468
Vvi16g0521 542 CDD CLECT 56 173 - -
Vvi16g0521 542 ProSiteProfiles Protein kinase domain profile. 256 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0521 542 SUPERFAMILY Protein kinase-like (PK-like) 230 532 IPR011009 -
Vvi16g0521 542 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 332 542 - -
Vvi16g0521 542 SMART CLECT_2 44 174 IPR001304 -
Vvi16g0521 542 SMART tyrkin_6 255 532 IPR020635 GO:0004713|GO:0006468
Vvi16g0521 542 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 171 536 - -
Vvi16g0521 542 FunFam C-type lectin receptor-like tyrosine-protein kinase 233 331 - -
Vvi16g0521 542 Gene3D Phosphorylase Kinase; domain 1 233 331 - -
Vvi16g0521 542 SUPERFAMILY C-type lectin-like 39 176 IPR016187 -
Vvi16g0521 542 Gene3D - 21 179 IPR016186 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0521 Vvi-Chr16 10083226 10090123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0521 73 538 Receptor kinase-like Gene Family AT1G52310 71.429 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vvi16g0521 PK_Tyr_Ser-Thr 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0521 - - vvi:100245331 1105.51