Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0508 ATGAACAACCCCCCCTCCTCCTCTTTCTTACTCTCCGCATCTTGTTGTTTCTTCTTACTCAGAATCACCCTTGTCTTCTCTGCCCCGCTTCCTCTTCAGCTCATCTCCCTTCTCGCCTTAAAGTCCTCCCTCAAAGACCCCCTCTCCACCCTCCATGGCTGGGACCCCACCCCCTCCCTCTCCACCCCTGCCTTCCACCGCCCCCTCTGGTGCTCATGGTCCGGCGTCAAGTGCGACCCTAAAACTTCTCACGTCACTTCTCTCGACCTCTCTCGCCGCAACCTCTCCGGCACTATACCCCCCGAAATTCGCTACTTGTCCACCTTGAACCACCTCAATTTGAGCGGAAATGCCTTCGATGGTCCCTTCCCACCCTCTGTTTTTGAACTCCCCAACCTTCGGGCTCTTGACATCAGCCACAACAACTTCAATTCCTCTTTCCCACCGGGCCTTTCCAAGATCAAGTTCTTGCGCCTCCTCGATGCTTATAGCAACAGCTTCACCGGCCCCCTCCCTCAGGACATCATCCAGCTCCGCTACCTCGAGTTCCTCAACCTGGGTGGAAGCTACTTTGAAGGCAGTATTCCTGCCATTTACGGCAATTTTCCCAGGCTCAAGTTTCTACACTTAGCTGGGAATGCTCTGGATGGCCCCATACCTCCCGAGTTAGGACTGAATGCCCAGTTGCAGCGCTTGGAGATCGGTTACAACGCGTTTTATGGTGGAGTTCCAATGCAGTTTGCATTGTTGTCCAATCTCAAGTACCTGGACATCTCAACTGCAAATCTTTCAGGTCCTTTGCCGGCACATCTCGGGAACATGACCATGCTTCAGACCTTACTCCTCTTCAGCAACCACTTTTGGGGTGAAATTCCGGTGAGTTATGCTAGGCTGACTGCTCTTAAAAGTTTGGATTTATCCAATAATCAGCTTACAGGGAGTATTCCGGAGCAATTCACCTCTCTCAAGGAGCTCACCATCTTGAGCCTCATGAACAACGAGCTCGCCGGAGAAATACCGCAAGGCATTGGCGACCTCCCAAACTTGGACACCCTATCTCTCTGGAACAACTCTTTGACCGGTACTCTCCCTCAAAATCTAGGATCAAACGCCAAGTTGATGAAGCTGGACGTGTCCTCAAACTTCCTCACTGGCTCCATTCCTCTAAACCTTTGCCTTGGAAACCATTTGATAAAACTCATCCTCTTCGGCAACAGGCTTGTATCGGAGCTCCCCAACTCCTTAGCAAATTGTACTTCATTGATGAGGTTCCGAGTTCAAGGTAACCAGCTCAACGGCTCCATTCCTTACGGCTTCGGCCAAATGCCCAATCTAACTTACATGGATCTTAGCAAAAACAAGTTCAGCGGCGAAATACCAGAAGATTTCGGCAATGCCGCCAAGCTAGAGTACTTGAACATATCCGAAAATGCTTTCGACAGCCAGTTGCCCGACAACATATGGAGGGCGCCCAGTTTACAGATTTTTTCTGCTAGTTCCAGTAATATCAGAGGGAAAATCCCAGATTTCATCGGGTGTCGAAGCTTGTACAAGATTGAATTGCAAGGAAATGAGTTGAATGGCAGCATTCCTTGGGATATTGGCCACTGCATGAAGCTTTTGAGCTTGAATCTTCGTGACAACTCGCTTACTGGTATAATTCCATGGGAGATCTCCACGCTGCCCTCCATCACCGACGTTGATCTCTCTCATAATTTTCTCACCGGCACCATTCCTTCCAATTTCGATAATTGCAGTACTCTAGAGAGCTTCAACGTCTCATTCAATCTTCTCACCGGTCCCATACCGTCCTCCGGAACCATCTTCCCGAATCTCCACCCGTCGTCGTTCACCGGAAACGTGGACCTCTGCGGGGGAGTTGTGAGTAAGCCCTGCGCCGCGGGAACGGAGGCAGCGACGGCGGAAGACGTGCGTCAGCAGCCGAAGAAGACTGCGGGAGCGATAGTGTGGATCATGGCGGCGGCATTCGGGATCGGGTTATTCGTGCTGATAGCAGGGAGCCGGTGCTTCCGGGCGAACTATAGCCGAGGAATATCCGGGGAGAGGGAGATGGGACCGTGGAAATTGACGGCGTTCCAGAGGTTGAATTTCTCGGCGGATGATGTGGTGGAGTGTATATCAATGACGGATAAGATAATAGGGATGGGGTCGACCGGAACAGTGTACAAGGCGGAGATGCGAGGTGGGGAGATGATAGCGGTGAAGAAGCTGTGGGGAAAACAGAAAGAGACGGTGAGGAAGAGAAGAGGAGTGGTGGCGGAGGTGGATGTGCTGGGAAATGTGAGGCACAGGAACATAGTGAGACTGTTAGGGTGGTGCAGCAACAGCGATAGCACAATGCTGCTCTACGAGTACATGCCCAATGGGAGCTTGGACGACTTGCTGCATGGCAAGAACAAGGGTGACAACTTGGTAGCCGACTGGTACACCAGGTACAAAATCGCTCTCGGCGTGGCTCAGGGCATCTGCTATCTTCACCATGACTGTGATCCCGTCATTGTTCATCGTGATCTCAAGCCCAGCAACATTCTTCTCGACGCCGATATGGAGGCCAGAGTCGCCGATTTTGGCGTCGCCAAGCTCATTCAATGCGATGAATCCATGTCTGTAATTGCCGGTTCATATGGCTACATAGCACCAGAATACGCTTATACGCTCCAAGTGGATGAAAAGAGCGATATCTATAGCTACGGAGTGGTGCTGCTGGAGATACTGAGCGGAAAGCGGTCGGTGGAGGGGGAGTTTGGGGAGGGAAACAGCATCGTGGATTGGGTGAGGTTGAAGATAAAGAACAAGAACGGGGTGGACGAAGTGCTAGACAAGAATGCGGGTGCATCATGTCCCTCCGTCAGGGAAGAGATGATGCTGTTGCTCAGAGTTGCTTTGCTTTGCACCAGCCGCAATCCCGCCGACCGACCTTCCATGAGGGATGTTGTCTCCATGCTGCAGGAAGCCAAGCCTAAGAGGAAGTTGCCTGCAAGTGTCGGCAGCGGCGGTGCTGCTGCTGCTGCTGCTGCTACTCCCTTGCCACAAAAGCAAACTGTGGACTGTTAA 3075 0.5193 MNNPPSSSFLLSASCCFFLLRITLVFSAPLPLQLISLLALKSSLKDPLSTLHGWDPTPSLSTPAFHRPLWCSWSGVKCDPKTSHVTSLDLSRRNLSGTIPPEIRYLSTLNHLNLSGNAFDGPFPPSVFELPNLRALDISHNNFNSSFPPGLSKIKFLRLLDAYSNSFTGPLPQDIIQLRYLEFLNLGGSYFEGSIPAIYGNFPRLKFLHLAGNALDGPIPPELGLNAQLQRLEIGYNAFYGGVPMQFALLSNLKYLDISTANLSGPLPAHLGNMTMLQTLLLFSNHFWGEIPVSYARLTALKSLDLSNNQLTGSIPEQFTSLKELTILSLMNNELAGEIPQGIGDLPNLDTLSLWNNSLTGTLPQNLGSNAKLMKLDVSSNFLTGSIPLNLCLGNHLIKLILFGNRLVSELPNSLANCTSLMRFRVQGNQLNGSIPYGFGQMPNLTYMDLSKNKFSGEIPEDFGNAAKLEYLNISENAFDSQLPDNIWRAPSLQIFSASSSNIRGKIPDFIGCRSLYKIELQGNELNGSIPWDIGHCMKLLSLNLRDNSLTGIIPWEISTLPSITDVDLSHNFLTGTIPSNFDNCSTLESFNVSFNLLTGPIPSSGTIFPNLHPSSFTGNVDLCGGVVSKPCAAGTEAATAEDVRQQPKKTAGAIVWIMAAAFGIGLFVLIAGSRCFRANYSRGISGEREMGPWKLTAFQRLNFSADDVVECISMTDKIIGMGSTGTVYKAEMRGGEMIAVKKLWGKQKETVRKRRGVVAEVDVLGNVRHRNIVRLLGWCSNSDSTMLLYEYMPNGSLDDLLHGKNKGDNLVADWYTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDADMEARVADFGVAKLIQCDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLLEILSGKRSVEGEFGEGNSIVDWVRLKIKNKNGVDEVLDKNAGASCPSVREEMMLLLRVALLCTSRNPADRPSMRDVVSMLQEAKPKRKLPASVGSGGAAAAAAATPLPQKQTVDC* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0508 1024 Pfam Leucine rich repeat 84 143 IPR001611 GO:0005515
Vvi16g0508 1024 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
Vvi16g0508 1024 Pfam Leucine rich repeat 297 335 IPR001611 GO:0005515
Vvi16g0508 1024 FunFam leucine-rich repeat receptor-like protein kinase TDR 793 1001 - -
Vvi16g0508 1024 Gene3D Phosphorylase Kinase; domain 1 693 792 - -
Vvi16g0508 1024 Pfam Leucine Rich Repeat 539 560 IPR001611 GO:0005515
Vvi16g0508 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 196 292 - -
Vvi16g0508 1024 SMART LRR_typ_2 130 154 IPR003591 -
Vvi16g0508 1024 SMART LRR_typ_2 298 321 IPR003591 -
Vvi16g0508 1024 SMART LRR_typ_2 346 370 IPR003591 -
Vvi16g0508 1024 SMART LRR_typ_2 467 490 IPR003591 -
Vvi16g0508 1024 SMART LRR_typ_2 202 226 IPR003591 -
Vvi16g0508 1024 SMART LRR_typ_2 561 584 IPR003591 -
Vvi16g0508 1024 SMART LRR_typ_2 442 465 IPR003591 -
Vvi16g0508 1024 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 199 991 - -
Vvi16g0508 1024 Gene3D Ribonuclease Inhibitor 511 634 IPR032675 -
Vvi16g0508 1024 ProSiteProfiles Leucine-rich repeat profile. 300 323 IPR001611 GO:0005515
Vvi16g0508 1024 FunFam Leucine-rich repeat receptor-like protein kinase 33 195 - -
Vvi16g0508 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Vvi16g0508 1024 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Vvi16g0508 1024 SUPERFAMILY RNI-like 267 604 - -
Vvi16g0508 1024 ProSiteProfiles Protein kinase domain profile. 714 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0508 1024 Gene3D Transferase(Phosphotransferase) domain 1 793 1002 - -
Vvi16g0508 1024 SUPERFAMILY Protein kinase-like (PK-like) 717 989 IPR011009 -
Vvi16g0508 1024 Gene3D Ribonuclease Inhibitor 196 292 IPR032675 -
Vvi16g0508 1024 Gene3D Ribonuclease Inhibitor 393 510 IPR032675 -
Vvi16g0508 1024 Gene3D Ribonuclease Inhibitor 293 392 IPR032675 -
Vvi16g0508 1024 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Vvi16g0508 1024 SMART serkin_6 714 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0508 1024 SUPERFAMILY L domain-like 56 312 - -
Vvi16g0508 1024 Pfam Protein kinase domain 717 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0508 1024 FunFam Leucine-rich repeat receptor-like protein kinase TDR 319 634 - -
Vvi16g0508 1024 PRINTS Leucine-rich repeat signature 561 574 - -
Vvi16g0508 1024 PRINTS Leucine-rich repeat signature 301 314 - -
Vvi16g0508 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 683 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0508 Vvi-Chr16 9543934 9547667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0508 37 997 Receptor kinase-like Gene Family AT1G08590 43.290 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi16g0508 Pkinase 9.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0508 - - vvi:100266344 2002.25