Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g0508 | ATGAACAACCCCCCCTCCTCCTCTTTCTTACTCTCCGCATCTTGTTGTTTCTTCTTACTCAGAATCACCCTTGTCTTCTCTGCCCCGCTTCCTCTTCAGCTCATCTCCCTTCTCGCCTTAAAGTCCTCCCTCAAAGACCCCCTCTCCACCCTCCATGGCTGGGACCCCACCCCCTCCCTCTCCACCCCTGCCTTCCACCGCCCCCTCTGGTGCTCATGGTCCGGCGTCAAGTGCGACCCTAAAACTTCTCACGTCACTTCTCTCGACCTCTCTCGCCGCAACCTCTCCGGCACTATACCCCCCGAAATTCGCTACTTGTCCACCTTGAACCACCTCAATTTGAGCGGAAATGCCTTCGATGGTCCCTTCCCACCCTCTGTTTTTGAACTCCCCAACCTTCGGGCTCTTGACATCAGCCACAACAACTTCAATTCCTCTTTCCCACCGGGCCTTTCCAAGATCAAGTTCTTGCGCCTCCTCGATGCTTATAGCAACAGCTTCACCGGCCCCCTCCCTCAGGACATCATCCAGCTCCGCTACCTCGAGTTCCTCAACCTGGGTGGAAGCTACTTTGAAGGCAGTATTCCTGCCATTTACGGCAATTTTCCCAGGCTCAAGTTTCTACACTTAGCTGGGAATGCTCTGGATGGCCCCATACCTCCCGAGTTAGGACTGAATGCCCAGTTGCAGCGCTTGGAGATCGGTTACAACGCGTTTTATGGTGGAGTTCCAATGCAGTTTGCATTGTTGTCCAATCTCAAGTACCTGGACATCTCAACTGCAAATCTTTCAGGTCCTTTGCCGGCACATCTCGGGAACATGACCATGCTTCAGACCTTACTCCTCTTCAGCAACCACTTTTGGGGTGAAATTCCGGTGAGTTATGCTAGGCTGACTGCTCTTAAAAGTTTGGATTTATCCAATAATCAGCTTACAGGGAGTATTCCGGAGCAATTCACCTCTCTCAAGGAGCTCACCATCTTGAGCCTCATGAACAACGAGCTCGCCGGAGAAATACCGCAAGGCATTGGCGACCTCCCAAACTTGGACACCCTATCTCTCTGGAACAACTCTTTGACCGGTACTCTCCCTCAAAATCTAGGATCAAACGCCAAGTTGATGAAGCTGGACGTGTCCTCAAACTTCCTCACTGGCTCCATTCCTCTAAACCTTTGCCTTGGAAACCATTTGATAAAACTCATCCTCTTCGGCAACAGGCTTGTATCGGAGCTCCCCAACTCCTTAGCAAATTGTACTTCATTGATGAGGTTCCGAGTTCAAGGTAACCAGCTCAACGGCTCCATTCCTTACGGCTTCGGCCAAATGCCCAATCTAACTTACATGGATCTTAGCAAAAACAAGTTCAGCGGCGAAATACCAGAAGATTTCGGCAATGCCGCCAAGCTAGAGTACTTGAACATATCCGAAAATGCTTTCGACAGCCAGTTGCCCGACAACATATGGAGGGCGCCCAGTTTACAGATTTTTTCTGCTAGTTCCAGTAATATCAGAGGGAAAATCCCAGATTTCATCGGGTGTCGAAGCTTGTACAAGATTGAATTGCAAGGAAATGAGTTGAATGGCAGCATTCCTTGGGATATTGGCCACTGCATGAAGCTTTTGAGCTTGAATCTTCGTGACAACTCGCTTACTGGTATAATTCCATGGGAGATCTCCACGCTGCCCTCCATCACCGACGTTGATCTCTCTCATAATTTTCTCACCGGCACCATTCCTTCCAATTTCGATAATTGCAGTACTCTAGAGAGCTTCAACGTCTCATTCAATCTTCTCACCGGTCCCATACCGTCCTCCGGAACCATCTTCCCGAATCTCCACCCGTCGTCGTTCACCGGAAACGTGGACCTCTGCGGGGGAGTTGTGAGTAAGCCCTGCGCCGCGGGAACGGAGGCAGCGACGGCGGAAGACGTGCGTCAGCAGCCGAAGAAGACTGCGGGAGCGATAGTGTGGATCATGGCGGCGGCATTCGGGATCGGGTTATTCGTGCTGATAGCAGGGAGCCGGTGCTTCCGGGCGAACTATAGCCGAGGAATATCCGGGGAGAGGGAGATGGGACCGTGGAAATTGACGGCGTTCCAGAGGTTGAATTTCTCGGCGGATGATGTGGTGGAGTGTATATCAATGACGGATAAGATAATAGGGATGGGGTCGACCGGAACAGTGTACAAGGCGGAGATGCGAGGTGGGGAGATGATAGCGGTGAAGAAGCTGTGGGGAAAACAGAAAGAGACGGTGAGGAAGAGAAGAGGAGTGGTGGCGGAGGTGGATGTGCTGGGAAATGTGAGGCACAGGAACATAGTGAGACTGTTAGGGTGGTGCAGCAACAGCGATAGCACAATGCTGCTCTACGAGTACATGCCCAATGGGAGCTTGGACGACTTGCTGCATGGCAAGAACAAGGGTGACAACTTGGTAGCCGACTGGTACACCAGGTACAAAATCGCTCTCGGCGTGGCTCAGGGCATCTGCTATCTTCACCATGACTGTGATCCCGTCATTGTTCATCGTGATCTCAAGCCCAGCAACATTCTTCTCGACGCCGATATGGAGGCCAGAGTCGCCGATTTTGGCGTCGCCAAGCTCATTCAATGCGATGAATCCATGTCTGTAATTGCCGGTTCATATGGCTACATAGCACCAGAATACGCTTATACGCTCCAAGTGGATGAAAAGAGCGATATCTATAGCTACGGAGTGGTGCTGCTGGAGATACTGAGCGGAAAGCGGTCGGTGGAGGGGGAGTTTGGGGAGGGAAACAGCATCGTGGATTGGGTGAGGTTGAAGATAAAGAACAAGAACGGGGTGGACGAAGTGCTAGACAAGAATGCGGGTGCATCATGTCCCTCCGTCAGGGAAGAGATGATGCTGTTGCTCAGAGTTGCTTTGCTTTGCACCAGCCGCAATCCCGCCGACCGACCTTCCATGAGGGATGTTGTCTCCATGCTGCAGGAAGCCAAGCCTAAGAGGAAGTTGCCTGCAAGTGTCGGCAGCGGCGGTGCTGCTGCTGCTGCTGCTGCTACTCCCTTGCCACAAAAGCAAACTGTGGACTGTTAA | 3075 | 0.5193 | MNNPPSSSFLLSASCCFFLLRITLVFSAPLPLQLISLLALKSSLKDPLSTLHGWDPTPSLSTPAFHRPLWCSWSGVKCDPKTSHVTSLDLSRRNLSGTIPPEIRYLSTLNHLNLSGNAFDGPFPPSVFELPNLRALDISHNNFNSSFPPGLSKIKFLRLLDAYSNSFTGPLPQDIIQLRYLEFLNLGGSYFEGSIPAIYGNFPRLKFLHLAGNALDGPIPPELGLNAQLQRLEIGYNAFYGGVPMQFALLSNLKYLDISTANLSGPLPAHLGNMTMLQTLLLFSNHFWGEIPVSYARLTALKSLDLSNNQLTGSIPEQFTSLKELTILSLMNNELAGEIPQGIGDLPNLDTLSLWNNSLTGTLPQNLGSNAKLMKLDVSSNFLTGSIPLNLCLGNHLIKLILFGNRLVSELPNSLANCTSLMRFRVQGNQLNGSIPYGFGQMPNLTYMDLSKNKFSGEIPEDFGNAAKLEYLNISENAFDSQLPDNIWRAPSLQIFSASSSNIRGKIPDFIGCRSLYKIELQGNELNGSIPWDIGHCMKLLSLNLRDNSLTGIIPWEISTLPSITDVDLSHNFLTGTIPSNFDNCSTLESFNVSFNLLTGPIPSSGTIFPNLHPSSFTGNVDLCGGVVSKPCAAGTEAATAEDVRQQPKKTAGAIVWIMAAAFGIGLFVLIAGSRCFRANYSRGISGEREMGPWKLTAFQRLNFSADDVVECISMTDKIIGMGSTGTVYKAEMRGGEMIAVKKLWGKQKETVRKRRGVVAEVDVLGNVRHRNIVRLLGWCSNSDSTMLLYEYMPNGSLDDLLHGKNKGDNLVADWYTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDADMEARVADFGVAKLIQCDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLLEILSGKRSVEGEFGEGNSIVDWVRLKIKNKNGVDEVLDKNAGASCPSVREEMMLLLRVALLCTSRNPADRPSMRDVVSMLQEAKPKRKLPASVGSGGAAAAAAATPLPQKQTVDC* | 1025 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g0508 | 1024 | Pfam | Leucine rich repeat | 84 | 143 | IPR001611 | GO:0005515 | |
Vvi16g0508 | 1024 | Pfam | Leucine rich repeat | 420 | 478 | IPR001611 | GO:0005515 | |
Vvi16g0508 | 1024 | Pfam | Leucine rich repeat | 297 | 335 | IPR001611 | GO:0005515 | |
Vvi16g0508 | 1024 | FunFam | leucine-rich repeat receptor-like protein kinase TDR | 793 | 1001 | - | - | |
Vvi16g0508 | 1024 | Gene3D | Phosphorylase Kinase; domain 1 | 693 | 792 | - | - | |
Vvi16g0508 | 1024 | Pfam | Leucine Rich Repeat | 539 | 560 | IPR001611 | GO:0005515 | |
Vvi16g0508 | 1024 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 196 | 292 | - | - | |
Vvi16g0508 | 1024 | SMART | LRR_typ_2 | 130 | 154 | IPR003591 | - | |
Vvi16g0508 | 1024 | SMART | LRR_typ_2 | 298 | 321 | IPR003591 | - | |
Vvi16g0508 | 1024 | SMART | LRR_typ_2 | 346 | 370 | IPR003591 | - | |
Vvi16g0508 | 1024 | SMART | LRR_typ_2 | 467 | 490 | IPR003591 | - | |
Vvi16g0508 | 1024 | SMART | LRR_typ_2 | 202 | 226 | IPR003591 | - | |
Vvi16g0508 | 1024 | SMART | LRR_typ_2 | 561 | 584 | IPR003591 | - | |
Vvi16g0508 | 1024 | SMART | LRR_typ_2 | 442 | 465 | IPR003591 | - | |
Vvi16g0508 | 1024 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 199 | 991 | - | - | |
Vvi16g0508 | 1024 | Gene3D | Ribonuclease Inhibitor | 511 | 634 | IPR032675 | - | |
Vvi16g0508 | 1024 | ProSiteProfiles | Leucine-rich repeat profile. | 300 | 323 | IPR001611 | GO:0005515 | |
Vvi16g0508 | 1024 | FunFam | Leucine-rich repeat receptor-like protein kinase | 33 | 195 | - | - | |
Vvi16g0508 | 1024 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 840 | 852 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi16g0508 | 1024 | ProSitePatterns | Protein kinases ATP-binding region signature. | 720 | 743 | IPR017441 | GO:0005524 | |
Vvi16g0508 | 1024 | SUPERFAMILY | RNI-like | 267 | 604 | - | - | |
Vvi16g0508 | 1024 | ProSiteProfiles | Protein kinase domain profile. | 714 | 993 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0508 | 1024 | Gene3D | Transferase(Phosphotransferase) domain 1 | 793 | 1002 | - | - | |
Vvi16g0508 | 1024 | SUPERFAMILY | Protein kinase-like (PK-like) | 717 | 989 | IPR011009 | - | |
Vvi16g0508 | 1024 | Gene3D | Ribonuclease Inhibitor | 196 | 292 | IPR032675 | - | |
Vvi16g0508 | 1024 | Gene3D | Ribonuclease Inhibitor | 393 | 510 | IPR032675 | - | |
Vvi16g0508 | 1024 | Gene3D | Ribonuclease Inhibitor | 293 | 392 | IPR032675 | - | |
Vvi16g0508 | 1024 | Gene3D | Ribonuclease Inhibitor | 34 | 195 | IPR032675 | - | |
Vvi16g0508 | 1024 | SMART | serkin_6 | 714 | 993 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0508 | 1024 | SUPERFAMILY | L domain-like | 56 | 312 | - | - | |
Vvi16g0508 | 1024 | Pfam | Protein kinase domain | 717 | 987 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0508 | 1024 | FunFam | Leucine-rich repeat receptor-like protein kinase TDR | 319 | 634 | - | - | |
Vvi16g0508 | 1024 | PRINTS | Leucine-rich repeat signature | 561 | 574 | - | - | |
Vvi16g0508 | 1024 | PRINTS | Leucine-rich repeat signature | 301 | 314 | - | - | |
Vvi16g0508 | 1024 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 683 | 792 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g0508 | Vvi-Chr16 | 9543934 | 9547667 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g0508 | 37 | 997 | Receptor kinase-like Gene Family | AT1G08590 | 43.290 | 0.0 | 765 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vvi16g0508 | Pkinase | 9.2e-49 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g0508 | - | - | vvi:100266344 | 2002.25 |