Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0507 ATGCTTGGTGTTGAGAGATTCTACCGCCATGAAATCTTTTTCCAACCATCTTTGATCGGAAGGGAAATAACCGAAATCCACGAAACTATCTACCATTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACCTACACAGAAACTTTGTGTTTAGCGGAAGGTCAACCATGTTCCCAAAAATTGCTGACAAGCTAAATAGAGAAATGAAACCATCAACATTCTTCACAAATGTGCTAGTAGTTGTGCTTGTTGTAGGGGTATCGTGTTCAACGTCGTCAAGTAATGGCTTAGTTGTCACTTCCTTTTGGCCTTGGCCCCAACATTGA 327 0.4128 MLGVERFYRHEIFFQPSLIGREITEIHETIYHSIMKCDVDIRKDLHRNFVFSGRSTMFPKIADKLNREMKPSTFFTNVLVVVLVVGVSCSTSSSNGLVVTSFWPWPQH* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0507 108 PANTHER ACTIN 2 72 IPR004000 -
Vvi16g0507 108 Pfam Actin 1 78 IPR004000 -
Vvi16g0507 108 SUPERFAMILY Actin-like ATPase domain 2 76 IPR043129 -
Vvi16g0507 108 Gene3D - 4 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0507 Vvi-Chr16 9532118 9532444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0507 2 79 Cytoskeleton Gene Families AT5G09810 58.025 8.09e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0507 K10355 - cit:102622338 93.5893