Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0506 ATGGAGTCAGCAAAATGTAAGATTTGTTTCAGGCAATTCTCTAACCGTAAAGCCTTGGGTGGTCACATGAGATCACACATGGCTAAGCTTTCCATTCAACCCAAGCCTCAGAAGCCTGACAACTCCTCCAAATTCGCTGTTCATGATGACCAAGAAAGCGAAACCGACACGCCCAAGAACCAGAGTCGCAGACGATCCAAACGGGCTTGCAGATCAATCAACAAAAAAGCCGACTCACCAGATAGCTCAGTGGTTTCTGATGTTGATGACTTTTCTGCAGAAGATGCTGCTCAGTTGTTGGTCTTGCTTTCAAGAGAGAAATGGACAAGGGGGAAAGAAGTAGACAATGAAGAATTAATGAAAGAGGACAATTTCACGATCATCTATCGGTGCGAAACCTGCAACAAGGGGTTTCAGTCCTATCAAGCCCTAGGAGGCCATAGAGCAAGCCACAAGAAGTTGAAGATCGAAAGCGATGAAGAAGATATTGCACCCAGCAAGGGCAATCAAAGAACTTTCAAATGTCCATTTTGCTTCAAGGTGTTTGAATCTGGGCAAGCCATGGGCGGACACAAGAAAGTTCACATGTCCACTGCAGCAGCCGCTGCTAGAAGGGTTTCCATGCCCGGACAAAACTTCATTGATCTCAATCTTCCTGCTCCCGAAGAAGACAATGGAAGTCAGGTGGATGATCCCTCAATCAAATGA 708 0.459 MESAKCKICFRQFSNRKALGGHMRSHMAKLSIQPKPQKPDNSSKFAVHDDQESETDTPKNQSRRRSKRACRSINKKADSPDSSVVSDVDDFSAEDAAQLLVLLSREKWTRGKEVDNEELMKEDNFTIIYRCETCNKGFQSYQALGGHRASHKKLKIESDEEDIAPSKGNQRTFKCPFCFKVFESGQAMGGHKKVHMSTAAAAARRVSMPGQNFIDLNLPAPEEDNGSQVDDPSIK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0506 235 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Vvi16g0506 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vvi16g0506 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Vvi16g0506 235 MobiDBLite consensus disorder prediction 42 63 - -
Vvi16g0506 235 MobiDBLite consensus disorder prediction 20 87 - -
Vvi16g0506 235 SUPERFAMILY beta-beta-alpha zinc fingers 128 195 IPR036236 -
Vvi16g0506 235 SMART c2h2final6 129 151 IPR013087 -
Vvi16g0506 235 SMART c2h2final6 4 26 IPR013087 -
Vvi16g0506 235 SMART c2h2final6 173 195 IPR013087 -
Vvi16g0506 235 MobiDBLite consensus disorder prediction 213 235 - -
Vvi16g0506 235 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vvi16g0506 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Vvi16g0506 235 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 36 IPR044303 GO:0006355
Vvi16g0506 235 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Vvi16g0506 235 Pfam C2H2-type zinc finger 173 197 - -
Vvi16g0506 235 Pfam C2H2-type zinc finger 5 29 - -
Vvi16g0506 235 Pfam C2H2-type zinc finger 129 153 - -
Vvi16g0506 235 Gene3D Classic Zinc Finger 128 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0506 Vvi-Chr16 9490833 9491540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0506 2 224 C2H2 Transcription Factor Family AT1G02030 41.221 1.07e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi16g0506 zf-C2H2_6 2.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0506 - - vvi:104882095 461.07