Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0500 ATGATGGAAGATGACAAGAAGCTCAAGCTAATTCTAACACTGTGCTCGGCAGCATTTCTAGCGACTGTGTTGTGTTTCATCTACTTGTGTTGTAAACAAAGAAGGCAGAATGAAGATGATGAGAAAGCAAGCTTGGAGTTGAAGGAAAGTGATGAAGAAAATAAAGAAAATTTGGTAACTTTTGAAGGTGGCCAAGATCTTACTATATATGATATATTGGACGCGCCTGGTGAAGTGATTGGGAAGTCAAATTACGGAACTTTGTACAAGGCTAGTTTTACGGGAAGGAGGGCGGGGTCACTGAGGCTGCTTCGGTTTCTGAGGCCTGCTTGCAGCGGAAGAATGGAGGAAGTTGTTGGTGTGATTCATATGCTGGGGTGTATAAGGCATAATCGCTTGGTTCCACTTGAAGCGTTTTACGCAGGGCCTAAAGGTGAGAAGCTTCTTGTTCATCCATTTTACGGATATGGGAATCTGGCGCGCTTCATCAGAGATGGAAATGGAGAGTCTCACAAATGGGCAGTCATCTATAGAATATCTGTTGGTATTGCTCAAGGATTGGATCATCTCCACACAGGATTGCAGAAGCCTGTAATCCATGGAAATCTCAAGTCCAAGAACATACTTCTGGATCGAAATTTCCAACCTTACATCTCGGATTTTGGGCAACACCTCCTCTTGAATCCAAGTGCAGGACAAGAAATGCTTGAAAGTTGTGGAGCTCAGGGATACAGGGCTCCTGAGCTCATCAAAATGAAGGATGTATGCCAAGAGACTGATATCTACAGCCTTGGGGTAATATTACTTGAATTACTTACAGGGAGGGAACCCATCAATGAGAACCCATCAGCTGATGAGGATTTTTACTTGCCTAACTCAATCAGAAATTGTGGACCCCGCATTTCGGCTCAATGCGTTTCCCACTCGATGGCGAGCTCGATTTTTATTTGA 951 0.4385 MMEDDKKLKLILTLCSAAFLATVLCFIYLCCKQRRQNEDDEKASLELKESDEENKENLVTFEGGQDLTIYDILDAPGEVIGKSNYGTLYKASFTGRRAGSLRLLRFLRPACSGRMEEVVGVIHMLGCIRHNRLVPLEAFYAGPKGEKLLVHPFYGYGNLARFIRDGNGESHKWAVIYRISVGIAQGLDHLHTGLQKPVIHGNLKSKNILLDRNFQPYISDFGQHLLLNPSAGQEMLESCGAQGYRAPELIKMKDVCQETDIYSLGVILLELLTGREPINENPSADEDFYLPNSIRNCGPRISAQCVSHSMASSIFI* 317
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0500 316 Pfam Protein kinase domain 116 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0500 316 Coils Coil 35 55 - -
Vvi16g0500 316 ProSiteProfiles Protein kinase domain profile. 74 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0500 316 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 10 296 - -
Vvi16g0500 316 SUPERFAMILY Protein kinase-like (PK-like) 77 286 IPR011009 -
Vvi16g0500 316 Gene3D Transferase(Phosphotransferase) domain 1 70 312 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi16g0500 Vvi-Chr16 9126939 9128923 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0500 46 306 Carbohydrate Esterase AT5G61570 55.839 2.47e-108 318
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi16g0500 Pkinase 7.8e-26 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0500 - - vvi:100244014 602.823