Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0498 ATGGAGGCTAAAGAAATTATTGAAGAAAAACAAGAACTTGCATTGGCGCTTCCCTTACCTTCCACCATTGCAGTGGCTATCAATGGAAAGAAAAAAAGCAAATATGTTGTTAGGTGGGCATTAGAGAAGTTTGTTCCCGAGGGATTGCATATGTTCAAGATGTTACATGTCCGTCCGAAGATAACCTCAGTCCCTACGCCGATGGGAAATTCGATTCCTCTTTCACAAGTGCGAGATGATGTAGCAGCTGCTTACCTGGAAGAAATGGGATGGCAGACAAGTGAAATGCTTCTTCCTTACAAGACAATGTTTTTGCATAAAAAGGTGCAAGTGGATGTTGTTGTGATTGAATCAGATGATGTTGCAAAGGCAATAGCAGAGGAGATAGCAAAAAGCACTATCCATAAGCTTGTTATTGGGGCTTCATCTAGTGGCATGTTTTCAAGGAAAGTTAAGGGACAAAGTCTGTCTTTGAGAATCTCAGAATGCACTCCAAGCTTCTGTACAGTCTATACTGTTTCAAAAGGACAATTATCCTCTGTGCGCCCGTCGGATTCAGATAAAAATGGAAGCATTAAAGAGGACAGTAGTGATGCAAGTTCTACCACCAGTTCTTCAAGTCACACTTCCAGCCCACATGCAGGTTCTGCAGCTTCATATTCTCATTTTCATTCTCCTTCACTACCAATGCAACGCTTTCAAGCTCTTTCAACTATTAACCGGACCCTTCTCCATACAAGAACAGGTTCAATTGAAACCAACTCTTCTAGACGTCAATCTCTGGATATCAGGGAAGAGGAGAGTTTTATGAGTCCATGCCCCAGTAATTCAGATATTGGTTATGCACCTAGTCAGGTTTCTAGTGCTAGAAGCTTCTTGACAGACGATCAATCATGGATTTCTGATCAAGCTTCCACCTCAGATGCTTTTACAGAGTCCTCGTCAGGAAGTCAGGTGAATATAAATTTTGAGCTAGAAAAACTGAGAGTTGAACTTAGACATGTCCGAGGGATATATGCAATGGCTCAAAGTGAGAACATTGATGCTTCTCGGAAGCTAAACGATCTAAGCAAGCGCCGATTGGAGGAAGCAGATAAGCTTAAGGAAATTAAACTCAAGGAGGAGGAAGCCAGAGAATTAGCAAGAAAAGAGAAGGAGAAATATGAAGCTGCAAAAAGGGAAGCCGAGTACGCAAGGGAATGTGCTGAAAAAGAAGCGTTACAAAGGAAAGAAGCAGAGATCAAAGCCTTGCATGATGTCAAAGAGAAAGAAAAGCTTGAAAATGCACTTGTTGGTCCAGTGCAGTCATATCAGGAGTTCACATGGGAAGAAATTGTGTCTGCTACCTCATCATTCTCTGAAAACCTTCAGATTGGGAAGGGGGCGCATGGAACTGTCTACAGGTGCAATCTGCATCATACAACTGCAGCAGTGAAAGTTCTCCACTCAAAGGAGGGTCATAGAACCAAGGAATTCCAGCAGGAGCTTGATGTATTAAGTAAAATTCGTCATCCTCATCTGCTGCTTCTTCTAGGCGCCTGTTCTGATCATGGTTGCCTAGTGTATGAGTACATGGAAAATGGTAGCTTGGAAGAGAGGTTGCTGCAGAAATATAATACAGCCCCAATTCCATGGTTTGAGAGATACCGAATTGCTTGGGAAGTAGCCTCAACCCTTGTCTTTCTTCACAACTCAAAGCCTAAATCAATCATCCATCGTGATCTGAAACCAGCAAACATCTTGCTTGATCATAACTTGGTGAGCAAGATCGGTGATGTTGGCCTTTCAACAATGCTTAATCTGGACTCTTCTATATGCAACATAAACACAGGTCCTGTTGGAACACTTTGCTACATAGATCCTGAATATCAACGGACTGGTTTAGTCTCTCCAAAATCCGATGTTTATGCTTTTGGGATGGTGGTTTTGCAGTTGCTGACTGCAAAACCAGCAATAGCACTAGCCCACCTGGTGGAAACAGCAATTCAAGATGACCAACTAATGAAGATTTTGGACCCAATGGCTGGGCAATGGCCAATGAAAGAAACAAAAGAATTGGCTCTATTAGGATTAAGCTGTCTAGAGCTTCGCCGAAGAGACAGGCCCGATTTAAAAGATGAGGTACTCCCTGCACTGGAGCGATTAAAAGATGCTGCTGACAGGTCCCGAGATTCAGCTCCCAAGGTTCAGTTGGCACCTCCTAACCATTTTGTCTGCCCAATACTTAAGGATGTAATGCATGACCCTTGTGTTGCTGCGGATGGATACACCTATGACCGAAGAGCAATAGAGAAATGGGTGGAAGAGAATGACAACTCGCCCATGACAAATTTGGCTTTGCCAAATAAGAATCTAATACCCAATTACACACTTCTTTCTGCAATTATGGAATGGAAGTCCCAAAGCAACCAATAA 2415 0.4277 MEAKEIIEEKQELALALPLPSTIAVAINGKKKSKYVVRWALEKFVPEGLHMFKMLHVRPKITSVPTPMGNSIPLSQVRDDVAAAYLEEMGWQTSEMLLPYKTMFLHKKVQVDVVVIESDDVAKAIAEEIAKSTIHKLVIGASSSGMFSRKVKGQSLSLRISECTPSFCTVYTVSKGQLSSVRPSDSDKNGSIKEDSSDASSTTSSSSHTSSPHAGSAASYSHFHSPSLPMQRFQALSTINRTLLHTRTGSIETNSSRRQSLDIREEESFMSPCPSNSDIGYAPSQVSSARSFLTDDQSWISDQASTSDAFTESSSGSQVNINFELEKLRVELRHVRGIYAMAQSENIDASRKLNDLSKRRLEEADKLKEIKLKEEEARELARKEKEKYEAAKREAEYARECAEKEALQRKEAEIKALHDVKEKEKLENALVGPVQSYQEFTWEEIVSATSSFSENLQIGKGAHGTVYRCNLHHTTAAVKVLHSKEGHRTKEFQQELDVLSKIRHPHLLLLLGACSDHGCLVYEYMENGSLEERLLQKYNTAPIPWFERYRIAWEVASTLVFLHNSKPKSIIHRDLKPANILLDHNLVSKIGDVGLSTMLNLDSSICNINTGPVGTLCYIDPEYQRTGLVSPKSDVYAFGMVVLQLLTAKPAIALAHLVETAIQDDQLMKILDPMAGQWPMKETKELALLGLSCLELRRRDRPDLKDEVLPALERLKDAADRSRDSAPKVQLAPPNHFVCPILKDVMHDPCVAADGYTYDRRAIEKWVEENDNSPMTNLALPNKNLIPNYTLLSAIMEWKSQSNQ* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0498 804 Coils Coil 407 427 - -
Vvi16g0498 804 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 153 - -
Vvi16g0498 804 CDD STK_N 22 176 - -
Vvi16g0498 804 MobiDBLite consensus disorder prediction 179 222 - -
Vvi16g0498 804 SMART serkin_6 452 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0498 804 CDD RING-Ubox_WDSUB1-like 734 788 - -
Vvi16g0498 804 ProSiteProfiles Protein kinase domain profile. 452 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0498 804 Gene3D Phosphorylase Kinase; domain 1 436 524 - -
Vvi16g0498 804 SMART Ubox_2 736 798 IPR003613 GO:0004842|GO:0016567
Vvi16g0498 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 804 IPR013083 -
Vvi16g0498 804 Pfam U-box domain 734 802 IPR003613 GO:0004842|GO:0016567
Vvi16g0498 804 PANTHER OS02G0152300 PROTEIN 23 797 - -
Vvi16g0498 804 ProSiteProfiles U-box domain profile. 732 804 IPR003613 GO:0004842|GO:0016567
Vvi16g0498 804 Gene3D Transferase(Phosphotransferase) domain 1 525 731 - -
Vvi16g0498 804 Gene3D HUPs 21 173 IPR014729 -
Vvi16g0498 804 SUPERFAMILY Protein kinase-like (PK-like) 434 706 IPR011009 -
Vvi16g0498 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Vvi16g0498 804 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Vvi16g0498 804 Pfam Protein kinase domain 454 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0498 804 MobiDBLite consensus disorder prediction 247 276 - -
Vvi16g0498 804 MobiDBLite consensus disorder prediction 195 222 - -
Vvi16g0498 804 SUPERFAMILY RING/U-box 722 802 - -
Vvi16g0498 804 Coils Coil 339 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0498 Vvi-Chr16 9059292 9073865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0498 22 800 U-box Gene Family AT4G25160 57.230 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi16g0498 Pkinase 4.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0498 - - vvi:100242290 1483.39