Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0497 ATGGCGAGGAGATCACCTTTGATTATAATTCAGTCACGGAGAGTAAGGAAGAGTACAGAGTTTCTGTTTGTTTGTGTGGCAGCTAAGTTTGTCGAAAGGAGTTATTTGAATCTAACGGGTGAAGGACTGGTATTTGTGTATCAAGAATCTGATGAGGAAGAATATAATCAATTCGACGAGGAATTCCCTCAAGACAAGAACTTAGCTAGTACAGATTGTGAGGAGATTATCGAGGAAGTGGCAGAAAGGATTGAGAAAGATTTGATTCTTCTCGCTGCCACTATTGTTGAAGACAAACTCCGAAATGGGGTTCTTGAATGCATTAACAAGCTTGCACAAGCTGGAAGGAAATTATGGGTTCTGACTGGAGATAAGACAGAGACTGCAGAGAGGATTCTTCATTATGAGTAG 411 0.4063 MARRSPLIIIQSRRVRKSTEFLFVCVAAKFVERSYLNLTGEGLVFVYQESDEEEYNQFDEEFPQDKNLASTDCEEIIEEVAERIEKDLILLAATIVEDKLRNGVLECINKLAQAGRKLWVLTGDKTETAERILHYE* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0497 136 Pfam haloacid dehalogenase-like hydrolase 40 134 - -
Vvi16g0497 136 Gene3D - 74 135 IPR023214 -
Vvi16g0497 136 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 43 133 - -
Vvi16g0497 136 SUPERFAMILY HAD-like 84 133 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0497 Vvi-Chr16 9027493 9036366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0497 43 132 Primary Pumps ATPases AT1G68710 62.222 1.00e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0497 K01530 K14802 vvi:100247431 129.028