Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0470 ATGTCGATCAGCGAGATAGCTTGCACTTACGCCGCTCTCATCCTCCATGATGACGAAATCTCAGTCACACTAGAGAAGATCAATACTTTGGTAAAAGCTGCGAAGGTGGAGGTTGAGTCTTACTGGATGGCTCTATTCGCTAAGCTAGTCGAGAAGAGAAACGTTGAAGATCTCATTCTTCAAATTGATGAATGCATTCCTAATATCTCAACACTCATTGCCAACGTTGGTTCAGGTGGAGGCGGTGCTCCCGTCTCTACTGCCGCCGCTCCTGTAGTTGAGGAGAAGAAGGAAGAACCAAAGGAAGAAAGTGACGACGACATGGGAATGCCAGGTGGCCATGGACCATATGGTTCCTTTCCAGCTGGCTATAATCCTAGCTCGGCTGCAGCAGCTGGGAACTCAACTGCTAATGAGGAAATTACTGCATCCCAGTTCAAGGAAAATAGTGTTTGCAGCACTGGTCAGCAGAGTGAAGGTCCAGCAGCCTGGATTGCTGCACCAGATCGGGACATTTCTGGCTTGCCATCCCCCCTCAAAGCTAGCATTGTAGCTTTCACCCCAACATAA 570 0.4877 MSISEIACTYAALILHDDEISVTLEKINTLVKAAKVEVESYWMALFAKLVEKRNVEDLILQIDECIPNISTLIANVGSGGGGAPVSTAAAPVVEEKKEEPKEESDDDMGMPGGHGPYGSFPAGYNPSSAAAAGNSTANEEITASQFKENSVCSTGQQSEGPAAWIAAPDRDISGLPSPLKASIVAFTPT* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0470 189 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Vvi16g0470 189 Hamap 50S ribosomal protein L12 [rpl12]. 6 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vvi16g0470 189 MobiDBLite consensus disorder prediction 92 109 - -
Vvi16g0470 189 Pfam 60s Acidic ribosomal protein 22 110 - -
Vvi16g0470 189 MobiDBLite consensus disorder prediction 79 156 - -
Vvi16g0470 189 MobiDBLite consensus disorder prediction 128 156 - -
Vvi16g0470 189 FunFam 60S acidic ribosomal protein P1 1 63 - -
Vvi16g0470 189 CDD Ribosomal_P1 5 110 - -
Vvi16g0470 189 Gene3D - 1 62 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0470 Vvi-Chr16 8412252 8416209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0470 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.782 3.27e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0470 K02942 - vvi:100257825 351.673