Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0466 ATGGCATCTGGGATGCATGTGGGCGTGAATAAAAAAATGGTTTCCAAAACTAAGTCAATTATGGAAATCTGGTCCGAGCCTACAAGCACACCCACATTTTTTTTAAAGTCGGTCCTCACCTCCCCTCTCATTCTTTTCTTTCCGTTCTTTATTCTTTTGGGTCCACGCCGAAGACATGGTGAGACTAGCTCCTGGAAAAATGTCCCAACGCGTGCAGGGCTAAGCAGGAGTCCGAAGAGTTGTAGGCTAAGGTGGAACAGCAAACTGAAGCCTGGTATCAACGAAAAGCCCTTCTCTGAAGAGGAAGAAGCCACCATTATCGAACTCCAAAAGCAGCATGGCAATAAGTGGGCAACTATTGCAAAGTGCCTGCCAGGGAGAACGGATACTGGGATCAAGAATTTCTGGAATAACCATCTGAAGAAGAAGCTTTCGAAAAAGGAGACTCCGAGCCTTGTCACTCAGACACCATGGCCCCAGCTTCTTGACACTGCTGATTTGTTGACTTGTGCTTTGAATGATCCCAGGGATGAAGTCAGCAAGTTGCATTCAGATGCCAGCTTTGCATGGAATCCTCGGCATGGACATGGCCTCCATCCAACAGATGAGGAGCTTCTCACTTCTCCTTCTCCTCTTCCTCCTCAAACACCCAGTTTCAATTACCAGCAGACTATGGAGGACCCACAAGTTTGTACCAGGAACCCAGATGGGATAGGTTCTAGGCCTGCGAGTATTCCAAATACAAGTTCCATTCCTGCGCCGGTTTCAGCCTCACTGGAGCCCTCCAAGGCCGATCAAGTAGAGGAGATTGTTGAGGGACACCCCAGCTGA 831 0.485 MASGMHVGVNKKMVSKTKSIMEIWSEPTSTPTFFLKSVLTSPLILFFPFFILLGPRRRHGETSSWKNVPTRAGLSRSPKSCRLRWNSKLKPGINEKPFSEEEEATIIELQKQHGNKWATIAKCLPGRTDTGIKNFWNNHLKKKLSKKETPSLVTQTPWPQLLDTADLLTCALNDPRDEVSKLHSDASFAWNPRHGHGLHPTDEELLTSPSPLPPQTPSFNYQQTMEDPQVCTRNPDGIGSRPASIPNTSSIPAPVSASLEPSKADQVEEIVEGHPS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0466 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Vvi16g0466 276 SMART sant 34 91 IPR001005 -
Vvi16g0466 276 SMART sant 94 142 IPR001005 -
Vvi16g0466 276 MobiDBLite consensus disorder prediction 190 276 - -
Vvi16g0466 276 SUPERFAMILY Homeodomain-like 75 147 IPR009057 -
Vvi16g0466 276 Gene3D - 96 157 - -
Vvi16g0466 276 ProSiteProfiles Myb-like domain profile. 57 89 IPR001005 -
Vvi16g0466 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 56 207 - -
Vvi16g0466 276 Gene3D - 50 94 - -
Vvi16g0466 276 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Vvi16g0466 276 MobiDBLite consensus disorder prediction 241 256 - -
Vvi16g0466 276 FunFam - 96 157 - -
Vvi16g0466 276 CDD SANT 97 140 IPR001005 -
Vvi16g0466 276 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Vvi16g0466 276 Pfam Myb-like DNA-binding domain 57 87 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0466 Vvi-Chr16 8379753 8402145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0466 52 147 MYB Transcription Factor Family AT1G18570 55.208 1.66e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0466 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0466 K09422 - vvi:104882090 437.958