Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0465 ATGGCTGGATCACTGCAGGCACATGAGCAGAGTGGGCTCGAGAAGCGCCAATGGACTCCAAGAGAAGATCGCAAACTCTTGAGCTATATGGAGGGACGTGACCATAAAAGTGTACGGTGGACAGAGGTCCCAAACGTTGCAGGGCTGAACAGGTGTAGGAAGAGTTGCTGGTTGAGGTGGACGAAATATCTGAAGCCTGGTATCAAGAGGGGGAAGTTTTCTGAAGAAGAAGAGAACCTCATTATCAAGCTCCATTCTCAGATTGGCAACAAATGGGCAATGATGGCGAGATATCTTCATCCCCGAACTGACAATGAAATCAAGAACTACTATAACACGCATTTAAAGAATCTTCCCTCTTCCACTCAGACACCACTCCATGGAGTCTGTCTAATTTCAACAGACCCTGCGGGGCCCGGTCAAACACGCGGTTTCAATTATCAGGCTATGGAGAATCCAACAGTACTTTACAACAACCATGCAGCCGATCCTGGTGTTTACTCTTTGTATGGGAATGTTCCAAATGAAGGCTCGACTCCAGCACTGATGGTTTCAGTGGAAAACGTGATCACACCACCAGCTGAAGAGTTCTCCCCTTTGGAAGCCTGGCTAGAAGAATTTCTCTCTGAGGATCAGACTGGTGAGACTAGTAACTCTTTTGGCGGAGACACTGCACTCGTGCAGCATACCTCCATTGTGTAG 702 0.4786 MAGSLQAHEQSGLEKRQWTPREDRKLLSYMEGRDHKSVRWTEVPNVAGLNRCRKSCWLRWTKYLKPGIKRGKFSEEEENLIIKLHSQIGNKWAMMARYLHPRTDNEIKNYYNTHLKNLPSSTQTPLHGVCLISTDPAGPGQTRGFNYQAMENPTVLYNNHAADPGVYSLYGNVPNEGSTPALMVSVENVITPPAEEFSPLEAWLEEFLSEDQTGETSNSFGGDTALVQHTSIV* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0465 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 64 IPR017930 -
Vvi16g0465 233 FunFam - 7 69 - -
Vvi16g0465 233 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Vvi16g0465 233 Pfam Myb-like DNA-binding domain 15 64 IPR001005 -
Vvi16g0465 233 CDD SANT 18 64 IPR001005 -
Vvi16g0465 233 ProSiteProfiles Myb-like domain profile. 10 64 IPR001005 -
Vvi16g0465 233 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vvi16g0465 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 118 - -
Vvi16g0465 233 CDD SANT 72 115 IPR001005 -
Vvi16g0465 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Vvi16g0465 233 SMART sant 14 66 IPR001005 -
Vvi16g0465 233 SMART sant 69 117 IPR001005 -
Vvi16g0465 233 Gene3D - 7 69 - -
Vvi16g0465 233 SUPERFAMILY Homeodomain-like 13 111 IPR009057 -
Vvi16g0465 233 Gene3D - 72 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0465 Vvi-Chr16 8378550 8379324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0465 12 152 MYB Transcription Factor Family AT5G07700 51.408 5.67e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0465 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0465 K09422 - vvi:104882089 489.189