Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0453 ATGACTCGGAGGGTTAGGCGAAAAGGGTCACAATCTAAGGACAAAGCCAAGGCAAACTTTCCGAGTTATTTGGAAATTGGGGATGCTATTAATGATGTTGACTGGACAAACTTGCCTGATGACACAGTGATTCAACTGTTTTCACGTCTAAATTATCGGGACCGAGCTAGCTTGTCATTAACCTGTCGATCATGGAGGCAATTGGGTTCCTCACCTTGTTTATGGACCTCACTGGATCTCCGGTCCCATAAGTTTGATGATAATGCTGCGGATTATCTTTCCTCTCAGTGTGCGAATATTACGAAGCTTCGGTTCCGTGGGGCTGAATCTGCAAATGCAATTATTAGACTTCAGGCAAGGGGTCTTCGTGAAATTAGCGGTGAATTTTGTCGGGATATTAATGATGCAACTCTTTCAGTTATAGCAGCTCGACATGAGGCGCTTGAGAGTCTACAGCTTGGGCCTGATGCTTGTGATAAGATCACCAGTGATGCTATCAAAGCAGTTGCTTTCTGCTGTCCAAAGTTGAAAAGGCTTAGAATTTCAGGTGTTCAGGTTGTTACTGGAGATGCCATAAATGCTTTAGGTAAGCATTGTGGGCAGTTGGTGGAACTCGGGTTTATCGATGGAGATAATGTAGATGGGGCAGCATTGGGGAACTTGAAGTCAGTTCGATTCCTATCAGTTGCAGGGACAAGAAACATGAAGTGGGGTTCAGCTGTGCAACCTTTGTGTAGATTGAATAGTTTGATTGGGATAGATGTGTCAAGAACCGATATAAGTTTGAGTTCTGTTACGAGGTTGTTGTCATTTTCCCAAAACTTGAAAGTCTTCTTCGCTCTGAATTGTCCAAAATTTGAGGCAGATGTTAATAATAGCACCAGCTATAATTACAAAGGAAAATTGTTAGTTGCCCTTTTCAGTGACATTTTTAAGGGAGTAGCCTCATTATTTGCTGATAAAATAGAGAATCAGAGGGAAGTGTTTTCTCATTGGAGGAAATTGAAGAATAGGGATAATAATTTGGATGAAATAGTGACATGGATTGAATGGATTCTCTCGCATTCCCTTCTGCGTATTTCAGAGAATAACCCGGAGGAGTTCAATGAGTTCTGGCTTAGGCAAGGAGCAGCATTGTTGCTTAGTTTAATGCAAAGCTCACAAGAGGATGTACAAGAAAGAGCAGCCACAGCAGTTGCAACTTTTGTTGTTATTGATGATGACAATGCTACTGTTGATTGTCGAAGGGCTGAGGCAGTTATGCAGGATGGTGGAGTAGAGCTGCTTTTGGACCTTGCTAGCTCTTGTCAGGAGGGGCTTCAGTCTGAAGCAGCAAAGGCTATTGCAAACTTGTCTGTGAATTCAAAAGTTGCAAAAGCTGTTGCTGAAAATGGTGGAATTGACATACTTAGTAACTTGGCGAGGTCAATGAACAGATTGGTTGCTGAAGAGGCTGCTGGAGGGCTATGGAATCTCTCTGTGGGAGAAGAGCACAAGGGTGCAATAGCTGAGACCGGTGGTATAAGAGCCTTGGTAGACCTTATTTTCAAATGGCAGTCTGCTGGTGATGGAGTTCTTGAGCGTGCAGCTGGTGCATTGGCAAACTTGGCAGCCGATGATAAGTGTAGCATGGAGGTCGCAATGGTGGGTGGTGTCCATGCTTTGGTGATGCTTGCTCGGTCCTGCAAATTTGAGGGAGTGCAGGAGCAGGCTGCTCGTGCCTTGGCTAATTTGGCTGCCCATGGAGATAGCAACAATAACAATTCTGCTGTTGGGCAAGAGGCTGGTGCACTGGAAGCACTGGTTCAACTTACTTGTTCTCAACATGAAGGGGTCAGGCAGGAAGCTGCTGGTGCTTTGTGGAATTTGTCATTTGATGATAGAAATAGAGAAGCCATTGCAGCAGCTGGTGGTGTTGAGGCCTTGGTTGCTCTTGCACAAACTTGCTCAAATGCCTCCCAAGGTCTTCAAGAAAGGGCTGCTGGTGCTCTCTGGGGATTGTCAGTATCAGAAGCTAACAGTATTGCCATTGGACGACAGGGAGGTGTTGCACCCCTTATTGCATTGGCACGTTCAAATGTTGAAGATGTCCATGAGACTGCCGCAGGAGCACTCTGGAATCTTGCTTTCAATCCTCATAATGCTCTCCGTATAGTGGAGGATGGGGGAGTTCAAGCTCTTGTTAATTTATGTTCTTACTCACTATCAAAAATGGCGCGCTTCATGGCTGCATTGGCATTGGCATACATGTTTGATGGAAGAATGGATGAAGTTGCACTTGTGGGGCCTTCATCAGAGGGTGCTTCAAAGAGTAGAAACATCAATGGGGCTAGAAAGATGGCCTTGAAGAATATCGAAGCATTTGTGCTTACATTTACAAACCCACATACCTTTGGTCTTGCTCTTGCATCATCAGCCCCCACAGCTCTTGTACAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAGTGGGGCTGAGATTGGAAGATTTGTAACCATGCTAAAGAACCCTTCTCCAGTTCTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAGTTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAAAAGGCAGTAGCATTGCGGACCCTGCGTGCTGCAGCTGCAGCCGCAACTGCCCCTGTTGAAGCCAAAGTTTTTGCAAGAATTGTACTTCGAAACCTAGAGCACTACCAGGTAGAAGCTTCAATTTAG 2745 0.4539 MTRRVRRKGSQSKDKAKANFPSYLEIGDAINDVDWTNLPDDTVIQLFSRLNYRDRASLSLTCRSWRQLGSSPCLWTSLDLRSHKFDDNAADYLSSQCANITKLRFRGAESANAIIRLQARGLREISGEFCRDINDATLSVIAARHEALESLQLGPDACDKITSDAIKAVAFCCPKLKRLRISGVQVVTGDAINALGKHCGQLVELGFIDGDNVDGAALGNLKSVRFLSVAGTRNMKWGSAVQPLCRLNSLIGIDVSRTDISLSSVTRLLSFSQNLKVFFALNCPKFEADVNNSTSYNYKGKLLVALFSDIFKGVASLFADKIENQREVFSHWRKLKNRDNNLDEIVTWIEWILSHSLLRISENNPEEFNEFWLRQGAALLLSLMQSSQEDVQERAATAVATFVVIDDDNATVDCRRAEAVMQDGGVELLLDLASSCQEGLQSEAAKAIANLSVNSKVAKAVAENGGIDILSNLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAETGGIRALVDLIFKWQSAGDGVLERAAGALANLAADDKCSMEVAMVGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNNNNSAVGQEAGALEALVQLTCSQHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQTCSNASQGLQERAAGALWGLSVSEANSIAIGRQGGVAPLIALARSNVEDVHETAAGALWNLAFNPHNALRIVEDGGVQALVNLCSYSLSKMARFMAALALAYMFDGRMDEVALVGPSSEGASKSRNINGARKMALKNIEAFVLTFTNPHTFGLALASSAPTALVQVIEMACIQEAGHLRCSGAEIGRFVTMLKNPSPVLKSCAAFALLQFTIPGSRHAVHHASLLQKAVALRTLRAAAAAATAPVEAKVFARIVLRNLEHYQVEASI* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0453 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 506 551 IPR000225 GO:0005515
Vvi16g0453 914 SUPERFAMILY RNI-like 48 285 - -
Vvi16g0453 914 CDD F-box_AtADLO1-like 34 75 - -
Vvi16g0453 914 Gene3D - 318 476 IPR011989 -
Vvi16g0453 914 SUPERFAMILY ARM repeat 355 740 IPR016024 -
Vvi16g0453 914 SMART arm_5 626 669 IPR000225 GO:0005515
Vvi16g0453 914 SMART arm_5 539 580 IPR000225 GO:0005515
Vvi16g0453 914 SMART arm_5 711 752 IPR000225 GO:0005515
Vvi16g0453 914 SMART arm_5 454 494 IPR000225 GO:0005515
Vvi16g0453 914 SMART arm_5 413 453 IPR000225 GO:0005515
Vvi16g0453 914 SMART arm_5 670 710 IPR000225 GO:0005515
Vvi16g0453 914 SMART arm_5 585 625 IPR000225 GO:0005515
Vvi16g0453 914 SMART arm_5 495 538 IPR000225 GO:0005515
Vvi16g0453 914 PANTHER PROTEIN ARABIDILLO 1 1 911 - -
Vvi16g0453 914 Gene3D - 477 762 IPR011989 -
Vvi16g0453 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Vvi16g0453 914 Pfam Armadillo/beta-catenin-like repeat 590 624 IPR000225 GO:0005515
Vvi16g0453 914 Pfam Armadillo/beta-catenin-like repeat 626 668 IPR000225 GO:0005515
Vvi16g0453 914 Pfam Armadillo/beta-catenin-like repeat 454 493 IPR000225 GO:0005515
Vvi16g0453 914 Pfam Armadillo/beta-catenin-like repeat 672 709 IPR000225 GO:0005515
Vvi16g0453 914 Pfam Armadillo/beta-catenin-like repeat 496 538 IPR000225 GO:0005515
Vvi16g0453 914 Pfam Armadillo/beta-catenin-like repeat 540 580 IPR000225 GO:0005515
Vvi16g0453 914 Pfam F-box-like 35 81 IPR001810 GO:0005515
Vvi16g0453 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Vvi16g0453 914 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Vvi16g0453 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 637 682 IPR000225 GO:0005515
Vvi16g0453 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 681 723 IPR000225 GO:0005515
Vvi16g0453 914 Gene3D Ribonuclease Inhibitor 28 302 IPR032675 -
Vvi16g0453 914 SMART fbox_2 38 78 IPR001810 GO:0005515
Vvi16g0453 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 507 IPR000225 GO:0005515
Vvi16g0453 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 581 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0453 Vvi-Chr16 8082035 8134681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0453 518 754 U-box Gene Family AT2G23140 32.773 3.05e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0453 - - vvi:100247439 1729.53