Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0448 ATGCCCCAAACCAAAGAAGCGTCTCTCTCTGCATCTGAACTTATGATGCTGAGAGAAGCAAAACTCCTGGGGGTAGGCCTCATAACACTCCTCCACTTTAGTTTTCTTTCATTTTGCGCTGCTAGTGAAAACCAGCCCTGCAGGCCCTCTTCTTGCGGAGATATTCAAAACATCAGCATCCCATTTCGATTAAAAGGAGATCTGCTCGGCTGCGGTCATCCTGATCCTGCATACGAATTGGTTTGTGAAAACAATCGTACCATGTTATATGGGAAATACTATGTCGAGGAGATCAATTACCAGAACTACACCATCAGAGTAGTGGTTGCCGGGCTAGAGAAGAGCAACTGTTTCTCCCTTCCTCTCTATTCCTTGACAGCAGATCATCTAGATGGATATAAATATCCTGATGAACTGGATACTGTAGTTTTGATGAACTGCGCAAGACCAATCTTTGATCAATACTACATTCCTATTGTTCCCTGCAACCGCACCGATGCTACTTTCTCTTCCTCACAACCATATGCTTATGCACTATCTGGGCGCAACCAGCAGGTGAGAGATCTTCCATATTCGTGCACCATTGGCTTGACTGTTGTCACTGGCAATTTCATGGCTGTGTCAGAGCCCAGCAATCTTTTAAGATCAGATTTGCAAGAAAAGCTGCTTATGGGGCTCCAGATTTCATTTTTGAGCTCTCGCTGCCATGAATGCGAAGCGAAAGGCAGATGGTGCACGCAACATTTCAGCAACAACACTATAGAATGCCTTGGTGATGATGGAAGAAACTGGCTTAATAAGTTGAAAAATGTACTGGAGCTAGCAATTGCGTTCTTTATTAATACACTTGGAAGTCCCTATACAACCCAAGGACGTAAAGATAGTATTGAAGACTCTGGGACTGTTGGAATTGGTGCCTGGTTTCTTGAAAAGACTGTCATGATAATCATTGGAGGACGCTTCGTACTCGGGATATCTTGTCTTTTGGGCTATTTAATCTACAAGTTTCAACGGAGACATTTATCAGTAGATGATGATATTGAAGAGTTTCTTCAAAATCACAAAAATCTCCAACCCATCAGGTACTCATATTCACACTTAAAGAAGGTAACCAATAATTTCAAGAATAAGTTAGGCCAAGGAGGCTTTGGCTCTGTGTACAAAGGAATACTTCAGAGTGGCCGCATTGTAGCAGTAAAAGTATTAGTCATTTCAAAAGCCAATGGACAAGATTTTATCAATGAAATCGCCACAATTGGAAGGATTCACCATGTTAATATAGTACAACTTGTTGGATTTTGCGTAGAAGGATCAAAATGGGCCCTAATATATGACTTTATGCCAAATGGGTCACTTGATAAGTTTATCTTCCTTAAAGGAGAAAAAAACATTCCTTTAAGTTGGGATAGATTGTACAAAATTGCACTTGGAGTAGGGCATGGGATTGAATACTTACATCAAGGGTGTGACATGCAAATTCTACATTTTGATATCAAGCCACACAATATTCTTTTGGATGAAGACTTTACACCAAAAGTTTCGGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGTGTTGTTTCTCTCACTGCAGCCCGAGGAACATTAGGATACATTGCTCCAGAGTTGTTTTATAAAAATGTTGGGCATGTGTCGTATAAGGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAATGGTGGGAAAGCAAAGGCATTTTAGAAGACATGAAGAGGAAGATCTAAGTGAATTATTCTTCCCGTCATGGATTTATGACCGAATTGAACAAGGAGAAGATATGGAAATGGGAGACGTCATAGAGGATGAAAAAATATATATATGGAAGATGGTCATAGTTGCATTGTGGTGTGTGCAAATGAAGCCCATGGACCGTCCTTCTATGAGCAAAGCACTCGACATGTTGGAAGGTGATGTTGAACTATTGCAACTACCTCTTAAACCTACCTTATATTCTCATGAAATATCAGCTTTGGATCTGGAGAACAAACCAATGGGGGTTCCAATTTCCTCACATAATGCAAGTATTACAATTAGCTTAGATGGGAGGTAA 2079 0.4036 MPQTKEASLSASELMMLREAKLLGVGLITLLHFSFLSFCAASENQPCRPSSCGDIQNISIPFRLKGDLLGCGHPDPAYELVCENNRTMLYGKYYVEEINYQNYTIRVVVAGLEKSNCFSLPLYSLTADHLDGYKYPDELDTVVLMNCARPIFDQYYIPIVPCNRTDATFSSSQPYAYALSGRNQQVRDLPYSCTIGLTVVTGNFMAVSEPSNLLRSDLQEKLLMGLQISFLSSRCHECEAKGRWCTQHFSNNTIECLGDDGRNWLNKLKNVLELAIAFFINTLGSPYTTQGRKDSIEDSGTVGIGAWFLEKTVMIIIGGRFVLGISCLLGYLIYKFQRRHLSVDDDIEEFLQNHKNLQPIRYSYSHLKKVTNNFKNKLGQGGFGSVYKGILQSGRIVAVKVLVISKANGQDFINEIATIGRIHHVNIVQLVGFCVEGSKWALIYDFMPNGSLDKFIFLKGEKNIPLSWDRLYKIALGVGHGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTNESVVSLTAARGTLGYIAPELFYKNVGHVSYKADVYSFGMLLMEMVGKQRHFRRHEEEDLSELFFPSWIYDRIEQGEDMEMGDVIEDEKIYIWKMVIVALWCVQMKPMDRPSMSKALDMLEGDVELLQLPLKPTLYSHEISALDLENKPMGVPISSHNASITISLDGR* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0448 692 ProSiteProfiles Protein kinase domain profile. 372 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0448 692 SUPERFAMILY Protein kinase-like (PK-like) 352 645 IPR011009 -
Vvi16g0448 692 Pfam Protein kinase domain 375 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0448 692 FunFam PR5-like receptor kinase 447 656 - -
Vvi16g0448 692 Gene3D Transferase(Phosphotransferase) domain 1 447 652 - -
Vvi16g0448 692 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Vvi16g0448 692 FunFam serine/threonine-protein kinase PBS1-like 342 446 - -
Vvi16g0448 692 Pfam Wall-associated receptor kinase galacturonan-binding 47 108 IPR025287 GO:0030247
Vvi16g0448 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Vvi16g0448 692 Gene3D Phosphorylase Kinase; domain 1 345 446 - -
Vvi16g0448 692 SMART serkin_6 372 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0448 692 PANTHER RUST RESISTANCE KINASE LR10-RELATED 344 661 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0448 Vvi-Chr16 7939170 7942326 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0448 47 671 Receptor kinase-like Gene Family AT5G38260 36.420 2.44e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0448 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0448 - - vvi:100247587 1269.6