Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0447 ATGATAATCATTGGAGGACACTTTGTACTCGGGATATCTTGTCTTTTGGGCTATTTAATCTACAAGTTTCAACAAAGACATTTATCATTAGATGATGATATTGAAGAGTTTCTTCAAAATCACAAAAATCTCCAACCCATCAAGTACTCATATTCACATTTAAAGAAGGTAACCAATAATTTCAAGAATAAGATAGGCCAAGGAGGCTTTGTCTCTTTGTACAAAGGAATACTTCATAGTGGCCACATTGTAGTAGTAAAAGTATTGGTCATGTCAAAAGCTAATGGACAAGATTTTATCAATGAAATCACCACAATTGGGAGGATTCGCCATGTTAATATAGTACAACTTGTTGGATTTTGCTCAGAAGGGTCAAAATGGGCCCTTATATATGATTTTATGCCAAATGGGTCACTTGATAAGTTTATCTTCCTTAAAGGAGAAAAAAACATTCCTTTAAGTTGGGACAGATTGTACAAAATTGCACTTGGAGTAGGGCATGGGATTAAATACTTACATCAAGGGTGTGACATGCAAATTCTACATTTCGATATCAAACCACACAATATTCTTTTGGATGAAGACTTTACACCAAAAGTTTCGGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGGGTTGTATCTCTCACTATAGCTCGAGGAACATTAGGATACATTGCTCCAAAGTTGTTTTATAAAAATGTTGGACATGTGTCTTATAAGGCTGATGTTTATAGCTTTGGAATGTCGTTGTTGATGGAAATGGTGGGAAAACAAAGACATTTTAGTAGATATGAAGATAAATATCTTAGTGAATTATTCTTCCCATCATGGATTTATGATCGAATTGAACAAAGAGAAGATATGGGAATGGGAGCTATCACAGAGGATGAAAAGAAATATATATGGAAGATGGTTATAGTTACATTGTAG 939 0.3397 MIIIGGHFVLGISCLLGYLIYKFQQRHLSLDDDIEEFLQNHKNLQPIKYSYSHLKKVTNNFKNKIGQGGFVSLYKGILHSGHIVVVKVLVMSKANGQDFINEITTIGRIRHVNIVQLVGFCSEGSKWALIYDFMPNGSLDKFIFLKGEKNIPLSWDRLYKIALGVGHGIKYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTNERVVSLTIARGTLGYIAPKLFYKNVGHVSYKADVYSFGMSLLMEMVGKQRHFSRYEDKYLSELFFPSWIYDRIEQREDMGMGAITEDEKKYIWKMVIVTL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0447 312 SMART serkin_6 59 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0447 312 SUPERFAMILY Protein kinase-like (PK-like) 39 269 IPR011009 -
Vvi16g0447 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vvi16g0447 312 FunFam Os07g0541700 protein 134 224 - -
Vvi16g0447 312 Gene3D Transferase(Phosphotransferase) domain 1 134 308 - -
Vvi16g0447 312 Gene3D Phosphorylase Kinase; domain 1 24 133 - -
Vvi16g0447 312 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 312 IPR045874 GO:0004672
Vvi16g0447 312 FunFam serine/threonine-protein kinase PBS1-like 29 133 - -
Vvi16g0447 312 Pfam Protein kinase domain 62 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0447 312 ProSiteProfiles Protein kinase domain profile. 59 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0447 Vvi-Chr16 7932224 7933162 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0447 9 312 Receptor kinase-like Gene Family AT1G66910 45.455 2.82e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0447 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0447 - - vvi:104882077 575.474