Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0444 ATGCCAAATGGATCACTTGATAAGTTTATCTTCCTTAAAGGAGAAAAACACATTCCTTTAAGTTGGGACAGATTGTACAAAATTGAACTTGGAGTAGGGCGTGGGATTGAATACTTACATCAAGGGTGTGACATGCAAATTCTGCATTTTGATATCAAGCCACACAATATTCTTTTGGATGAAGACTTTACACCAAAAGTTTCGGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGTGTTGTATCTCTCACTGCAGCTCGAGGAACATTAGGATACATTGCTCCAGAGTTGTTTTATAAAAACGTTGGACATGTGTCGTATAAGGCTGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGTGGGAAAACAAAGGCATTTTAGTAGACATCAAGAGGAAGATCTAAGTGAATTATTCTTCCCATCATGGATTTATGATCGAATTGAACAAGGAGAAGATATGGAAATGGGAGATGTCACAGAGGATGAAAAGAAATATATATGGAAGATGGTCATAGTTGCATTGTGGTGTGTGCAAATGAAGCCCATGGACCGTCCTTCTATGAGCAAAGCACTCGACATGTTAGAAGGTGATGTTGAACTATTGCAACTACCTCCTAAACCTACCTTATATTCTCATGAAATATCAGCTTTGGATCGGGAGAATAAACCAATGGGGGTTCCAATTTCCTCACATAATGCAAGTATTACAATTAGCTTAGATGGGAGATAA 741 0.3738 MPNGSLDKFIFLKGEKHIPLSWDRLYKIELGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTNESVVSLTAARGTLGYIAPELFYKNVGHVSYKADVYSFGMLLMEMVGKQRHFSRHQEEDLSELFFPSWIYDRIEQGEDMEMGDVTEDEKKYIWKMVIVALWCVQMKPMDRPSMSKALDMLEGDVELLQLPPKPTLYSHEISALDRENKPMGVPISSHNASITISLDGR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0444 246 ProSiteProfiles Protein kinase domain profile. 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0444 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Vvi16g0444 246 Gene3D Transferase(Phosphotransferase) domain 1 1 206 - -
Vvi16g0444 246 SUPERFAMILY Protein kinase-like (PK-like) 1 199 IPR011009 -
Vvi16g0444 246 Pfam Protein kinase domain 2 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0444 246 FunFam PR5-like receptor kinase 1 210 - -
Vvi16g0444 246 SMART serkin_6 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0444 246 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 218 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0444 Vvi-Chr16 7885243 7885983 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0444 1 222 Receptor kinase-like Gene Family AT5G38280 50.222 8.01e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0444 Pkinase 1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0444 - - vvi:100247587 505.753