Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0438 ATGTCTGAGGTCCATTTTGTTTTAGCAATTGTGTTGTCCAAGGTAAGTGCTGCCAGTGCTTGTGAAGATTATAAAGCTCTCAAGCTCTCAAGATACTCCTATGCTGATATTAAGAAGATTACAAATCACTTCAAGGAAAAATTGGGTCAAGGCGGATATGGAACTTTGTATAAAGGAAAGCTTTCTAGTGACGTTCTTGTTGCAGTAAAGATCCTAAACAATTCAAAAGAAAATGGAGAAGAGTTCATTAATGAAGTGGCAACAATGGGTAGGATCCATCATGTCAATGTGTTAGATAAGGGAGAAGAGGTGTGTATTCGAATTGAGGAAGAGGGAGACACCTCAATTGCAAAGAAGTTAACAATTGTGGGACTTTGTTGCATTCAATGGCATCTAATAGATTGCCCTTTTATGAAAGTTGTGATTCAAATGTTGGAAGGAGGAGGAGACAATTTAACCATGCCATCCAACCCTTTTGCTTCTATAGATTCAACAAGAATAAACATCAGAAGGTGTAAAAGATCTCTTCAACAAGAGTTGGCAGTCATCTCAAAATTAATAGAGTGA 567 0.3739 MSEVHFVLAIVLSKVSAASACEDYKALKLSRYSYADIKKITNHFKEKLGQGGYGTLYKGKLSSDVLVAVKILNNSKENGEEFINEVATMGRIHHVNVLDKGEEVCIRIEEEGDTSIAKKLTIVGLCCIQWHLIDCPFMKVVIQMLEGGGDNLTMPSNPFASIDSTRINIRRCKRSLQQELAVISKLIE* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0438 188 PANTHER RUST RESISTANCE KINASE LR10-RELATED 27 98 IPR045874 GO:0004672
Vvi16g0438 188 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Vvi16g0438 188 Pfam Protein tyrosine and serine/threonine kinase 43 99 IPR001245 GO:0004672|GO:0006468
Vvi16g0438 188 Gene3D Phosphorylase Kinase; domain 1 15 100 - -
Vvi16g0438 188 SUPERFAMILY Protein kinase-like (PK-like) 30 98 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0438 Vvi-Chr16 7738618 7750823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0438 27 98 Receptor kinase-like Gene Family AT1G66980 52.778 1.01e-20 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0438 PK_Tyr_Ser-Thr 4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0438 - - vvi:100247801 150.214