Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0437 ATGCTGAGACAAGCAAAACTTGTGGGAGTAGGCCTCATAACACTCCTCCATGTCCGTTTTCTTTCATTTTGCGCTGCTAGTGAAAATCAGCCCTGCAGGCCCTCTTCTTGTGGAGATATTCAAAACATCAGCAACCCATTTCGATTAAAAGGTGACCCGCTTAGCTGTGGTCATCCTGATCCTGCATACGAATTGGTTTGTGAAAACAACCGTACAATCTTATATGGGAAATACCATGTTGCGGAGATCAACTACCATAACTATACCATCAGAGTTGTAGTTGTTGGGCTAGAGAAGACCAACTGTTTCTCCCTTCCTCTCTATTCCTTGACAGTAAATCATGTAGATGGATATAAATATCCTGATGAACTGGATACTGTGGTTTTGATGAACTGCGCAAGACCAATCTTTGATCAATACTACATTCCTATTGTTCCCTGCAACCGCACCGATGCTACTTTCTCTTCCTCACAACCATATTTTTATGCGCTAGTTGGAGGCTCCAAGCAGGTGAGAGATCTTCCGTATTCATGCACCATTGGCATGACTGTTGTTACTGGCAATTTGAAGGCTGTTTCAGAGCCCAGCAATCTTTCAAGCTCAGATTTGCAAGAAAAGCTGCTTATGGGGCTCCAGCTTTCATTTTTGAGCTTCCGCTGCCATGAATGCAAAGTGAAAGGCAGATGGTGTATGCCAAATTTCAGCAACAACACTATACAATACCATGATCATGATGGAAGAAACTTCATGATAATCATCGGAGGACGCTTCATACTTGGGACATCTTGTCTTTTGGGCTATTTAATCTACAAGTTTCAACGGAGACATTTATCATTAGATGATGATATTGAAGAGTTTCTTCAAAATCACAAAAATCTCCAACCCATCAGGTACTCATATTCACATTTAAAGAAGGTAACCGATAATTTCAAGAATAAGTTAGGCCAAGGAGGCTTTGGCTCTGTGTACAAAGGAATACTTCAGAGTGGCCGCATTGTAGCAGTAAAAGTATTGGTCATGTCAAAAGCTCATGGACAAGATTTTATCAATGAAATCGCAACAATTGGAAGGATTCACCATGTTAATATAGTACAACTTGTTGGATTTTGCGTAGAAGGGTCAAAATGGGCTCTTATATATGACTTTATGCCAAATGGGTCACTTGATAAGTTTATCTTCCTTAAAGGAGAAAAAAACATTCCTTTAAGTTGGGATAGATTGTACAAAATTGCACTTGGAGTAGGGCATGGGATTAAATACTTACATCAAGGGTGTGACATGCAAATTCTACATTTCGATATCAAACCACACAATATTCTTTTGGATGAAGACTTTACACCAAAAGTTTCAGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGTGTTGTATCTCTCACTGCAGCCCGAGGAACATTAGGATACATTGCTCCAGAGTTGTTTTATAAAAACATTGGACATGTGTCTTATAAGGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAATGGTGGGAAAACAGAGGCATTTTAGTGGATATGAAGAGGAATATCTTAGTGAATTATTCTTCCCATCATGGATTTATGATCGAATTGAACAAACACAAGATATGAGAATGGGAGATGTCACAGAGGATGAAAAGAAATATATATCGAAGATGGTTATAGTTGCATTGTGGTGTGTGCAAATGAGTCCCATGGACCGTCCTTCTATGAGCAAAGCACTCGACATGTTGGAAGGTGATGTTGAACTATTGCAACTACCTCCTAAACCTACCTTATATTCTCATGAAATATCAGCTTTGGATCGGGAGAACAACCCAATGGGGGTTCCAATTTCCTCACGTAATGCAAGTATTACAATTAGCTTAGATGGGAGGTAA 1887 0.3932 MLRQAKLVGVGLITLLHVRFLSFCAASENQPCRPSSCGDIQNISNPFRLKGDPLSCGHPDPAYELVCENNRTILYGKYHVAEINYHNYTIRVVVVGLEKTNCFSLPLYSLTVNHVDGYKYPDELDTVVLMNCARPIFDQYYIPIVPCNRTDATFSSSQPYFYALVGGSKQVRDLPYSCTIGMTVVTGNLKAVSEPSNLSSSDLQEKLLMGLQLSFLSFRCHECKVKGRWCMPNFSNNTIQYHDHDGRNFMIIIGGRFILGTSCLLGYLIYKFQRRHLSLDDDIEEFLQNHKNLQPIRYSYSHLKKVTDNFKNKLGQGGFGSVYKGILQSGRIVAVKVLVMSKAHGQDFINEIATIGRIHHVNIVQLVGFCVEGSKWALIYDFMPNGSLDKFIFLKGEKNIPLSWDRLYKIALGVGHGIKYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTNESVVSLTAARGTLGYIAPELFYKNIGHVSYKADVYSFGMLLMEMVGKQRHFSGYEEEYLSELFFPSWIYDRIEQTQDMRMGDVTEDEKKYISKMVIVALWCVQMSPMDRPSMSKALDMLEGDVELLQLPPKPTLYSHEISALDRENNPMGVPISSRNASITISLDGR* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0437 628 SMART serkin_6 308 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0437 628 Pfam Wall-associated receptor kinase galacturonan-binding 32 93 IPR025287 GO:0030247
Vvi16g0437 628 Gene3D Transferase(Phosphotransferase) domain 1 383 587 - -
Vvi16g0437 628 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Vvi16g0437 628 PANTHER RUST RESISTANCE KINASE LR10-RELATED 280 600 IPR045874 GO:0004672
Vvi16g0437 628 SUPERFAMILY Protein kinase-like (PK-like) 288 581 IPR011009 -
Vvi16g0437 628 Pfam Protein kinase domain 311 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0437 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Vvi16g0437 628 FunFam serine/threonine-protein kinase PBS1-like 278 382 - -
Vvi16g0437 628 FunFam PR5-like receptor kinase 383 592 - -
Vvi16g0437 628 Gene3D Phosphorylase Kinase; domain 1 281 382 - -
Vvi16g0437 628 ProSiteProfiles Protein kinase domain profile. 308 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0437 Vvi-Chr16 7734643 7737756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0437 2 608 Receptor kinase-like Gene Family AT5G38260 38.043 4.15e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0437 Pkinase 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0437 - - vvi:100247587 1147.88