Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0436 ATGCAAATTCTACATTTCGATATCAAACCACACAACATTCTTTTGGATGAAGACTTTACACCAAAAGTTTTGGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGGGTTGTATCTCTCACTACAGCCCGAAGAACATTAGGATACATTGCTCCAGAGTTGTTTTATAAAAACATTGGACATGTGTCTTATAAGTTTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAATGGTGGGAAAACAAAGACATTTTAGTCGATATGAAGAGAAATATCTTAGTGAATTATTCTTCCCATCATGGATTTATGATCGAATTGAACAAAGAGAAGATATGGGAATGGGAGCTGTCACAGAGGATGAAAAGAAATATATATGGAAGATGGTTATAGTTGCATTGTAG 405 0.3383 MQILHFDIKPHNILLDEDFTPKVLDFGLAKLYSTNERVVSLTTARRTLGYIAPELFYKNIGHVSYKFDVYSFGMLLMEMVGKQRHFSRYEEKYLSELFFPSWIYDRIEQREDMGMGAVTEDEKKYIWKMVIVAL* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0436 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0436 134 Pfam Protein kinase domain 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0436 134 SUPERFAMILY Protein kinase-like (PK-like) 2 103 IPR011009 -
Vvi16g0436 134 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Vvi16g0436 134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Vvi16g0436 134 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 134 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0436 Vvi-Chr16 7681100 7681504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0436 2 113 Receptor kinase-like Gene Family AT4G18250 51.327 8.75e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0436 Pkinase 3.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0436 - - vvi:109124160 255.373