Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0435 ATGGGTAGGATCCATCATGTCAATGTGGTTCGCTTGGTTGGATTTTGTGCTGATGGAGTTAAACGAGCTTTAATTTATGAGTTCTTACCAAATGAGTCTTTGGAGAAGTATATATTTTCAAAATCTATCAAGGACTGCTCACTTAGCTGGGAGAAGCTTCAAAATGTTGCTTTAGGCATAGCTAAAGGAATTGAGTATCTTCACCAAGGTTGTGATAAAAGAATTCTCCATTTCGATATCAAACCTCATAATATTTTGCTTGATCAAAACTTTAATCCAAAAATCTCTGATTTTGGTCTAGCCAAATTATGTTCCAAGGAACAAAGTGCAGTTTCAATGACAACAGCAAGAGGGACCATGGGCTATATTGCACCAGAAGTATTATCAAGGAACTTTGGAAATGTGTCCTATAAGTCAGATATTTATAGTTTTGGAATGTTGCTGCTAGAAATGGTAGGAGGAAGGAAGAATATTGATGTCACAATGGAGAAGACTAGTCAAGTATACTTCCCAGAATGGGTTTATAATCAGTTAGATCAAGGGGAAGACGTGTGTATTCGAATTGTGGAAGATGGAGATACTAAAATTGCAAAGAAGCTAACAATTGTGGGACTTTGGTGCATCCAATGGTATCCCATAGATCGCCCTTCCATGAAAGTTGTCATTCAAATGTTGGAAGGAGGAGGAAACAATTTAACCATGCCGCCCAACCCTTTTGCTTCCATAGATGCAACAAGAACAAACACCTGA 750 0.38 MGRIHHVNVVRLVGFCADGVKRALIYEFLPNESLEKYIFSKSIKDCSLSWEKLQNVALGIAKGIEYLHQGCDKRILHFDIKPHNILLDQNFNPKISDFGLAKLCSKEQSAVSMTTARGTMGYIAPEVLSRNFGNVSYKSDIYSFGMLLLEMVGGRKNIDVTMEKTSQVYFPEWVYNQLDQGEDVCIRIVEDGDTKIAKKLTIVGLWCIQWYPIDRPSMKVVIQMLEGGGNNLTMPPNPFASIDATRTNT* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0435 249 Gene3D Transferase(Phosphotransferase) domain 1 30 231 - -
Vvi16g0435 249 SMART serkin_6 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0435 249 Pfam Protein kinase domain 2 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0435 249 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 241 IPR045874 GO:0004672
Vvi16g0435 249 Gene3D Phosphorylase Kinase; domain 1 1 29 - -
Vvi16g0435 249 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0435 249 SUPERFAMILY Protein kinase-like (PK-like) 1 226 IPR011009 -
Vvi16g0435 249 PIRSF ILK 1 233 - -
Vvi16g0435 249 FunFam PR5-like receptor kinase 29 236 - -
Vvi16g0435 249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 75 87 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0435 Vvi-Chr16 7665001 7665750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0435 1 238 Receptor kinase-like Gene Family AT1G66910 52.675 4.94e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0435 Pkinase 2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0435 - - vvi:100247801 509.22