Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0425 ATGGGGGTTTTCATTTGTTCCTCAAATAAAACAGACTACTCAAATTACTTTTTGTCCATCCCTTGCACCATTCTCCTCAGCAACCCAGTCTATGTTGTTGGTTCTTACTATTATCTTGAAAGCTTGGATCTATCCTCTTGCCACAAGATTTACAACGTTACGCTCCCAGATGATATAGTTAATGGGGAAAATTATTTTTCCTCAACATGGTCAGAATTGATATGTGGAAACTGCGAAAGAGAAGGTAAGCAACGCAGACTGAAGAGCAATGTTGGCAAAGAACCTGAAACTGAATGTATTGATAAGCCAGAAAAAGCGGTAATCCTCAGTTTCTGTCTTGTGGTGCTTGTAGTCATCGCACTTTATCATTCGTATAGCTCAGACAAATTAGAAAGAGAGAATACAAAAAGGATTGAACAGTTTCTAGAAGACTATAAAGCCCTCGAGCCCTCAAGATACTCCTTTGCTGATATTAAGAAGATTACAAATCATTTCAAGGAAAAATTGGGTCAAGGCAGTTATGGAACTATGTATAAAGGAAAGTTTTCTAGTGACGCTCTTGTTGCAGTCAAAATCCTAAACAATTCAAAAGAAAATGGAGAAGAGTTCATTAGTGAAGTGGGAACAATGGGTAGGATCCATCATGTCAATATAGTTCACTTGGTTGGATTTTGTACTGATGGAGTTAAACAAGCTTTAATTTATGAGTTTTTACCAAATGAGTATTTGGGGAAGTATATATTTTCATAA 750 0.3653 MGVFICSSNKTDYSNYFLSIPCTILLSNPVYVVGSYYYLESLDLSSCHKIYNVTLPDDIVNGENYFSSTWSELICGNCEREGKQRRLKSNVGKEPETECIDKPEKAVILSFCLVVLVVIALYHSYSSDKLERENTKRIEQFLEDYKALEPSRYSFADIKKITNHFKEKLGQGSYGTMYKGKFSSDALVAVKILNNSKENGEEFISEVGTMGRIHHVNIVHLVGFCTDGVKQALIYEFLPNEYLGKYIFS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0425 249 FunFam serine/threonine-protein kinase PBS1-like 130 237 - -
Vvi16g0425 249 ProSiteProfiles Protein kinase domain profile. 163 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0425 249 PANTHER RUST RESISTANCE KINASE LR10-RELATED 135 248 IPR045874 GO:0004672
Vvi16g0425 249 SUPERFAMILY Protein kinase-like (PK-like) 150 248 IPR011009 -
Vvi16g0425 249 Gene3D Phosphorylase Kinase; domain 1 123 237 - -
Vvi16g0425 249 Pfam Protein tyrosine and serine/threonine kinase 164 247 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0425 Vvi-Chr16 7465901 7467973 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0425 132 248 Receptor kinase-like Gene Family AT1G66980 48.305 4.33e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0425 PK_Tyr_Ser-Thr 1.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0425 - - vvi:100266216 424.091