Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0424 ATGTCAAAAGCCAATGGACAAGATTTTATCAATGAAATCGCCACGATTGGAAGGATTCACCATGTTAATATAGTACAACTTGTTGGATTTTGTGTAGAAGGATCAAAATGGGCCCTTATATATGACTTTATGCCAAATGGGTCACTTGATAAGTTTATCTTCCCTAAAGGAGAAAAACACATTCCTTTAAGTTGGGACAGATTATACAAAATTGCACTTGGAGTAGGGCATGGGATTGAATACTTACATCAAGGGTGTGACATGCAAATTCTGCATTTTGATATCAAGCCACACAATATTCTTTTGGATGAAGACTTTACACCAAAAGTTTCGGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGTGTTGTATCTCTCACTGCAGCTCGAGGAACATTAGGATACATTGCTCCAGAGTTGTTTTATAAAAATGTTGGACATGTGTCGTATAAGGCTGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGTGGGAAAACAAAGGCATTTTAGTAGACATCATGAGGAAGATCTAAGTGAATTATTCTTCCCGTCATGGATTTATGACCGAATTGAACAAGGAGAAGATATGGAAATGGGAGATGTCACAGAGGATGAAAAGAAATATGTATGGAAGATGGTCATAGTTGCATTGTGGTGTGTGCAAATGAAGCCCATGGCCCGCCCTTCTATGAGCAAAGCACTCGACATGTTGGAAGGTGATGTTGAACTATTGCAACTACCTCCTAAACCTACCTTATATTCTCATGAAATATCAGCTTTGGATCGGGAGAACAAACCAATGGGGGTTCCAATTTCCTCACATAATGCAAGTATTACAATTAGCTTAGATGGGAGATAA 870 0.3782 MSKANGQDFINEIATIGRIHHVNIVQLVGFCVEGSKWALIYDFMPNGSLDKFIFPKGEKHIPLSWDRLYKIALGVGHGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTNESVVSLTAARGTLGYIAPELFYKNVGHVSYKADVYSFGMLLMEMVGKQRHFSRHHEEDLSELFFPSWIYDRIEQGEDMEMGDVTEDEKKYVWKMVIVALWCVQMKPMARPSMSKALDMLEGDVELLQLPPKPTLYSHEISALDRENKPMGVPISSHNASITISLDGR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0424 289 ProSiteProfiles Protein kinase domain profile. 1 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0424 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Vvi16g0424 289 Pfam Protein kinase domain 6 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0424 289 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 261 IPR045874 GO:0004672
Vvi16g0424 289 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0424 289 SUPERFAMILY Protein kinase-like (PK-like) 6 242 IPR011009 -
Vvi16g0424 289 FunFam PR5-like receptor kinase 44 253 - -
Vvi16g0424 289 Gene3D Transferase(Phosphotransferase) domain 1 48 249 - -
Vvi16g0424 289 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0424 Vvi-Chr16 7454469 7455338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0424 1 265 Receptor kinase-like Gene Family AT5G38280 50.746 6.18e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0424 Pkinase 6.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0424 - - vvi:104882082 595.89