Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0423 ATGGAGAAGAGTTCATTAATGAAGTGGGAACAATGGGTAGGATCCATCATGTCAATGTGGTTCGCTTGGTGGGAGAAGCTTCAAAATATTGCTTTAGGCATAGCCAAAGGAATTGAGTATCTTCACCAAGGTTGTGATAAAATAATTCTCCATTTGGATATCAAACCTCATAATATTTTGCTTGATCAAAACTTCAATCCAAAAATCTCTGATTTTGGTCTAGCCAAATTATGTTCCAAGGAACAAAGTGTAATTTCAATGATAATAGCAAGATGGACCATGGGCTATATTGCACCAAAGGTATTATCAAGGAACTTTGGAAATGTGTCCTATAAGTCAAATATTTATAGATTTGGAATGTTGCTACTGGAAATGGTAGGAGGAAGAAAGAATATTGATGTCACAATGGAGAAGACTAGCCAAGTTTCCTTCCCAAAATGGGTTTATAATCAGTTAGATATGGGAGAAGAGGTGTGTATTCAAATTGAGGAAGAGGAAGACATTAAAATTGCAAAGAAGCTAACAATTTATGGGACTTTGGTGGATTCAATGGTATCCAATAGATCGCTCTTCTATAAAAGTTGA 585 0.3556 MEKSSLMKWEQWVGSIMSMWFAWWEKLQNIALGIAKGIEYLHQGCDKIILHLDIKPHNILLDQNFNPKISDFGLAKLCSKEQSVISMIIARWTMGYIAPKVLSRNFGNVSYKSNIYRFGMLLLEMVGGRKNIDVTMEKTSQVSFPKWVYNQLDMGEEVCIQIEEEEDIKIAKKLTIYGTLVDSMVSNRSLFYKS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0423 194 FunFam Os07g0541700 protein 17 91 - -
Vvi16g0423 194 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0423 194 Pfam Protein kinase domain 25 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0423 194 Gene3D Transferase(Phosphotransferase) domain 1 3 186 - -
Vvi16g0423 194 SUPERFAMILY Protein kinase-like (PK-like) 23 137 IPR011009 -
Vvi16g0423 194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Vvi16g0423 194 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 179 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0423 Vvi-Chr16 7452422 7453116 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0423 24 188 Receptor kinase-like Gene Family AT1G66980 48.023 3.79e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0423 Pkinase 4.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0423 - - vvi:100265974 266.929