Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0422 ATGAGTGTTGACTTGATGTATATAGCAATACTAAAAAATGTAACCAATAATTTCAAGAATAAGTTAGGCCAAGGAGGCTTTGGCTCTGTGTACAAAGGAATACTTCAGAGTGGCCGCATTGTAGTAGTAAAAGTATTGGTTATGTCAAAAGCCAATGGACAAGATTTTATCAATGAAATCGCCACAATTGGGAGGATTCACCATGTTAATATAGTACAACTTGTTGGATTTTGCGTAGAAGGATCAAAATGGGCCGTTATATATGACTTTATGCCAAATGGGTCACTTGATAAGTTTATCTTCCTTAAAGGAGAAAAAAACATTCCTTTAAGTTGGAACAGATTGTACAAAATTACACTCGGAGTAGGGCATGGGATTGAATACTTACATCAAGGGTGTGACATGCAAATTCTACATTTTGATATCAAGCCACACAATATTCTTTTGGATGAAGACTTTACACCAAAAGTTTCGGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGTATTGTTTCTCTCACTGCAGCCCGAGGAACATTAGGATACATTGCTCTAGAGTTGTTTTATAAAAACGTTGGACATGTGTCGTGTAAGGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAATGGTGGGAAAACAAAGGCATTTTAGTAGACATCATGAGGAAGATCTAAGTGAATTACTCTTCCCGTCATGGATTTATGATCGAATTGAACAAGGAGAAGATATGGAAATGGGAGATGTCACAGAGGATGAAAAGAAATATATATGGAAGATGGTCATAGTTGCATTGTGGTGTGTGCAAATGAAGCCCATGAACCGTCCTATGAGCAAAGCACTCGACATGTTGGAAGGTGATGTTGAACTATTGCAACTACCTCCTAAACCTACCTTATATTGTCATGAAATATCAGCTTTGGATCTGGAGAACAAACCAATGGGGGTTCCAATATCCTCACATAATGCAAGTATTACAATTAGCTTAGATGGGAGGATGATTAATAGGCATGCATTTTTATATGATGAAAATCACAATGCTACATTGATGTAA 1062 0.3663 MSVDLMYIAILKNVTNNFKNKLGQGGFGSVYKGILQSGRIVVVKVLVMSKANGQDFINEIATIGRIHHVNIVQLVGFCVEGSKWAVIYDFMPNGSLDKFIFLKGEKNIPLSWNRLYKITLGVGHGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTNESIVSLTAARGTLGYIALELFYKNVGHVSCKADVYSFGMLLMEMVGKQRHFSRHHEEDLSELLFPSWIYDRIEQGEDMEMGDVTEDEKKYIWKMVIVALWCVQMKPMNRPMSKALDMLEGDVELLQLPPKPTLYCHEISALDLENKPMGVPISSHNASITISLDGRMINRHAFLYDENHNATLM* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0422 353 SUPERFAMILY Protein kinase-like (PK-like) 7 280 IPR011009 -
Vvi16g0422 353 ProSitePatterns Protein kinases ATP-binding region signature. 22 44 IPR017441 GO:0005524
Vvi16g0422 353 ProSiteProfiles Protein kinase domain profile. 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0422 353 SMART serkin_6 16 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0422 353 Pfam Protein kinase domain 19 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0422 353 FunFam PR5-like receptor kinase 91 299 - -
Vvi16g0422 353 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Vvi16g0422 353 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 307 IPR045874 GO:0004672
Vvi16g0422 353 Gene3D Transferase(Phosphotransferase) domain 1 91 294 - -
Vvi16g0422 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0422 Vvi-Chr16 7432681 7439145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0422 11 311 Receptor kinase-like Gene Family AT5G38280 50.980 7.30e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0422 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0422 - - vvi:104882081 662.529