Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0421 ATGGGGTACAACTTTCAACCCAACGAATTTATTGGTCTGGGCTTGGGCTGGTTCAACCCAGTCTATGATGTTGGTTCTTACTATAATCTTGACCGCTTGGACCTATCCTCTTGCCACAAGATTTACAACGTTAGGCTCCCAGATGGTATAGTTAATGGGGAAAATTATTTTTCCTTAACATGGTCAGAATTGATATGTGGAAGCTGCGAAAGAGAAGGTAAGAAATGCAGACTGAAGAGCAATGTTGGCAAAGAACCTGAAACTGAATGTATTGATAAGCCAGAAAAGGAAAAATTGGGTCAAGGAGGTTATGGAACTGTGTATAAAGGAAAGGTTTTTAGCGATGTTCTTGTTGTAGTAAAGATCCTATACAATTCAAAAGAAAATGGAGAAGAGTTCATTAATGAATTAGTGGAAACAATGGCTAGGATCCATCATGTCAATGTGGTTCGCTTGGTTGGATTTTGTGCCGATGGAGTTAATTGA 486 0.3909 MGYNFQPNEFIGLGLGWFNPVYDVGSYYNLDRLDLSSCHKIYNVRLPDGIVNGENYFSLTWSELICGSCEREGKKCRLKSNVGKEPETECIDKPEKEKLGQGGYGTVYKGKVFSDVLVVVKILYNSKENGEEFINELVETMARIHHVNVVRLVGFCADGVN* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0421 161 Pfam Protein tyrosine and serine/threonine kinase 96 158 IPR001245 GO:0004672|GO:0006468
Vvi16g0421 161 PANTHER RUST RESISTANCE KINASE LR10-RELATED 91 159 IPR045874 GO:0004672
Vvi16g0421 161 Gene3D Phosphorylase Kinase; domain 1 77 161 - -
Vvi16g0421 161 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
Vvi16g0421 161 SUPERFAMILY Protein kinase-like (PK-like) 96 159 IPR011009 -
Vvi16g0421 161 ProSiteProfiles Protein kinase domain profile. 93 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0421 Vvi-Chr16 7429001 7431094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0421 91 159 Receptor kinase-like Gene Family AT1G66980 50.725 1.47e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0421 PK_Tyr_Ser-Thr 2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0421 - - vvi:100247801 137.887