Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0418 ATGATTGAATATTTATATCAAGGGTGTGACATGCAAATTTTGCATTTTGATATCAAGCCACACAATATTCTTTTGGATGAAGACTTTACTCTAAAAGTTTCAGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGTGTTGTAACTCTCACTGCAGCCCGAGGAACATTAGGATACATTGCTCCTAAGTTGTTTTATAAAAATGTTGGACATGTATCCTATAAGGCTGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGTGGGAAAACAAAGGCATTTTAGTAGACATGAAGAGGAATGTCTAAGTGAATTATTCTTCCCATCATGGATTTATGATCGAATTGAACAAAGAGAAGATATGGAAATGGGAGATGTCATAGAGGATGAAAAGAAATATATATGGAAGATGATGTTGAAGGTGATGTTGAACTATTGCAACTACCTCCTAAACCTACCTTATATTCTTATAAAATATCAGCTTTGGATTAGGAGAACAACCCAATGTGGGTTCCAACTTCCTCGCATAATGCAAGTATTAAAATTAGCTTAG 558 0.3387 MIEYLYQGCDMQILHFDIKPHNILLDEDFTLKVSDFGLAKLYSTNESVVTLTAARGTLGYIAPKLFYKNVGHVSYKADVYSFGMLLMEMVGKQRHFSRHEEECLSELFFPSWIYDRIEQREDMEMGDVIEDEKKYIWKMMLKVMLNYCNYLLNLPYILIKYQLWIRRTTQCGFQLPRIMQVLKLA* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0418 185 Pfam Protein kinase domain 2 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0418 185 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0418 185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 13 25 IPR008271 GO:0004672|GO:0006468
Vvi16g0418 185 SUPERFAMILY Protein kinase-like (PK-like) 2 127 IPR011009 -
Vvi16g0418 185 Gene3D Transferase(Phosphotransferase) domain 1 1 150 - -
Vvi16g0418 185 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 143 IPR045874 GO:0004672
Vvi16g0418 185 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0418 Vvi-Chr16 7348372 7348929 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0418 2 145 Receptor kinase-like Gene Family AT5G38260 50.000 5.86e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0418 Pkinase 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0418 - - vvi:100247587 270.396