Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0417 ATGTACAAAGGAATACTTCAGAGTGGCCGCATTGTAGCAGTAAAAGTATTGGTCATGTCAAAAGCCAATGGACAAGATTTTATCAATGAAATTGCCACAATTGGAAGGATTCACCATGTTAATATAGTACAACTTGTTGGATTTTGCGTAGAAGGATCAAAATGGGCCCTTATATATGACTTTATGCCAAATGGGTCACTTGATAAGTTTATCTTCCTTAAAGGAGAAAAACACATTCCTTTAAGTTGGGACAGATTGTACAAAATTGCACTTGGAGTAGGGCGTGGGATTGAATACTTACATCAAGGGTGTGACATGCAAATTCTGCATTTTGATATCAAGCCACACAATATTCTTTTGGATGAAGACTTTACACCAAAAGTTTCGGATTTTGGCCTTGCAAAATTGTATTCAACAAATGAAAGTGTTGTATCTCTCACTGCAGCTCGAGGAACATTAGGATACATTGCTCCAGAGTTGTTTTATAAAAACTTTGGACATGTGTCGTATAAGGCTGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGTGGGAAAACAAAGACATTTTAGTAGACATCAAGAGCAAGATCTAAGTGAATTATTCTTCTCGTCATGGATTTATGACCGAATTGAACAAGGAGAAGATATGAAAATAGGAGATGTCACAGAGGATGAAAAGAAATATATATGGAAGATGGTCATAGTTGCATTGTGGTGTGTGCAAATGAAGCCCATGGACCGTCCTTCTACGAGCAAAGCACTCGACATGTTGGATGGTGATGTTGAACTATTGCAACTACCTCCTAAACCTACCTTATATTCTCATGAAATATCAGCTTTGGATCGGGAGAACAAACCAATGGGGGTTCAAATTTCCTCACATAATGCAAGTATTACAATTAGCTTAGATGGGAGATAA 924 0.3723 MYKGILQSGRIVAVKVLVMSKANGQDFINEIATIGRIHHVNIVQLVGFCVEGSKWALIYDFMPNGSLDKFIFLKGEKHIPLSWDRLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTNESVVSLTAARGTLGYIAPELFYKNFGHVSYKADVYSFGMLLMEMVGKQRHFSRHQEQDLSELFFSSWIYDRIEQGEDMKIGDVTEDEKKYIWKMVIVALWCVQMKPMDRPSTSKALDMLDGDVELLQLPPKPTLYSHEISALDRENKPMGVQISSHNASITISLDGR* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0417 307 SMART serkin_6 2 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0417 307 SUPERFAMILY Protein kinase-like (PK-like) 2 259 IPR011009 -
Vvi16g0417 307 ProSiteProfiles Protein kinase domain profile. 1 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0417 307 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 279 IPR045874 GO:0004672
Vvi16g0417 307 FunFam PR5-like receptor kinase 62 271 - -
Vvi16g0417 307 Gene3D Transferase(Phosphotransferase) domain 1 63 267 - -
Vvi16g0417 307 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Vvi16g0417 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Vvi16g0417 307 Pfam Protein kinase domain 2 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0417 Vvi-Chr16 7343713 7344636 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0417 1 283 Receptor kinase-like Gene Family AT5G38280 51.916 8.71e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0417 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0417 - - vvi:104882076 624.394