Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0415 ATGAGCAACCCAGTCTATGATGTTGGTTCTTACTATAATCTTGACCGCTTGGACCTATCCTCTTGCCACAAGATTTACAACGTTACGCTCCCAGATGATATAGTTAATGGGGAAAATGATTTTTCCTTAACATGGTCAGAATTGATATGTGGAAACTGCGAAAGACAAGGCAAGAAATGCAGACTGAAGAGCAATGTTGGCAAAGAACCTGAAACTGAATGTATTGATAAGCCAGAAAAAGGTGTATCAAAAAACAAACTGGTTACAGTAAAGATCCTAAACAATTTAAAAGAAAATGGAGAAGAGTTCATTAATGAAGTGGGAACAATGGGTAGGATTCATCATGTCGATGTGGTTCGCTTGGTTGGATTTTGTGCTGATGGAGTTAAATGA 393 0.3791 MSNPVYDVGSYYNLDRLDLSSCHKIYNVTLPDDIVNGENDFSLTWSELICGNCERQGKKCRLKSNVGKEPETECIDKPEKGVSKNKLVTVKILNNLKENGEEFINEVGTMGRIHHVDVVRLVGFCADGVK* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0415 130 Gene3D Phosphorylase Kinase; domain 1 73 130 - -
Vvi16g0415 130 PANTHER RUST RESISTANCE KINASE LR10-RELATED 82 128 IPR045874 GO:0004672
Vvi16g0415 130 SUPERFAMILY Protein kinase-like (PK-like) 81 128 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0415 Vvi-Chr16 7290715 7292699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0415 82 130 Receptor kinase-like Gene Family AT1G66980 51.020 2.82e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0415 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0415 - - vvi:100247801 143.665