Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0413 ATGCGCTCATGGGTTTTCTGTTTCATTTCTGCTAGAGGAAATGTTTTTGGGAGAGATCTCGAGGTGGTACAGGCTGAAATCCAGGAAAGCTGTAAGAGAATTAATGAAAGTTTTGGGCAGCCAGATTATGACCCGATTGTATTTATTGATAGGTCATTTTATCTTAGTGAGAAAGCTGCATTTCACACCATTGCCAAGTGTGTCGTGGTGACAGCTGTCAGGGGTGGAATGAACCTTGTCCCATATGAGTATATCATGCCCAGGCAGGGGGTCTCTATATCTGAATTTGGTTCTGAATTAAGAGGCCCCAAGAAGAGTATGCTAGTGGTATCGGGGTTCATAGGATGGTCCCCTTCGCTGAGTGATGCCATTAAAATTAATCCAAATAGAAGATGA 396 0.4318 MRSWVFCFISARGNVFGRDLEVVQAEIQESCKRINESFGQPDYDPIVFIDRSFYLSEKAAFHTIAKCVVVTAVRGGMNLVPYEYIMPRQGVSISEFGSELRGPKKSMLVVSGFIGWSPSLSDAIKINPNRR* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0413 131 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 21 128 IPR001830 GO:0003824|GO:0005992
Vvi16g0413 131 Pfam Glycosyltransferase family 20 18 128 IPR001830 GO:0003824|GO:0005992
Vvi16g0413 131 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 18 129 - -
Vvi16g0413 131 Gene3D Glycogen Phosphorylase B; 3 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0413 Vvi-Chr16 7266119 7266514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0413 11 128 Trehalose Biosynthesis Gene Families AT1G06410 59.322 4.05e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0413 K16055 - vvi:100265140 177.178