Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g0411 | ATGGGTAGAATCCATCATGTCAATGTGGTTCGCTTGGTTGGATTTTGTGCTGATGGAGTTAAACGAGCTTTAGTTTATGAGTTCTTACCAAATGAGTCTTTGGAGAAGTATATATTTTCAAAATCTATCAAGGACTGCTCACTTAGCTGGGAGAAGCTTCGAAATGTTGCTTTAGGCATAGCTAAAGGAATTGAGTATCTTCACCAAGGTTGTGATAAAAGAATTCTCCATTTCGATATCAAACCTCATAATATTTTGCTTGATCAAAACTTTAATCCAAAAATCTCTGATTTTGGTCTAGCCAAATTATGTTCCAAGGAACAAAGTGCAGTTTCAATGACAACAGCAAGAGGGACCATGGGCTATATTGCACCAGAAGTATTATCAAGGAACTTTGGAAATGTGTCCTATAAGTCAGATATTTATAGTTTTGGAATGTTGCTACTAGAAATGGTAGGAGGAAGGAAGAATATTGATGTCACAATGGAGAAGACTAGTCAAGTATACTTCCCAGAATGGGTCTATAATCAGTTAGATCAGGGGGAAGACGTGTGTATTCGAATTGTGGAAGATGGAGATACTAAAATTGCAAAGAAGCTAACAATTGTGGGACTTTGGTGCATCCAATGGTATCCAATAGATCGCCCTTCCATGAAAGTTGTCATTCAAATGTTGGAAGGAGGAGGAAACAATTTAACCATGCCGCCCAACCCTTTTGCTTCCATAGATGCAACAAGAACAAACACCAGAAGGCGAAAAAGATCTCTTCAACAAGAGTTGGCAGTCATCTCAGAATTAATAGAGTGA | 807 | 0.3817 | MGRIHHVNVVRLVGFCADGVKRALVYEFLPNESLEKYIFSKSIKDCSLSWEKLRNVALGIAKGIEYLHQGCDKRILHFDIKPHNILLDQNFNPKISDFGLAKLCSKEQSAVSMTTARGTMGYIAPEVLSRNFGNVSYKSDIYSFGMLLLEMVGGRKNIDVTMEKTSQVYFPEWVYNQLDQGEDVCIRIVEDGDTKIAKKLTIVGLWCIQWYPIDRPSMKVVIQMLEGGGNNLTMPPNPFASIDATRTNTRRRKRSLQQELAVISELIE* | 269 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g0411 | 268 | Gene3D | Transferase(Phosphotransferase) domain 1 | 30 | 231 | - | - | |
Vvi16g0411 | 268 | PIRSF | ILK | 1 | 233 | - | - | |
Vvi16g0411 | 268 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 29 | - | - | |
Vvi16g0411 | 268 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 226 | IPR011009 | - | |
Vvi16g0411 | 268 | ProSiteProfiles | Protein kinase domain profile. | 1 | 240 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0411 | 268 | FunFam | PR5-like receptor kinase | 29 | 236 | - | - | |
Vvi16g0411 | 268 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 1 | 246 | IPR045874 | GO:0004672 | |
Vvi16g0411 | 268 | SMART | serkin_6 | 1 | 225 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0411 | 268 | Pfam | Protein kinase domain | 2 | 222 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0411 | 268 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 75 | 87 | IPR008271 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g0411 | Vvi-Chr16 | 7159325 | 7160131 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g0411 | 1 | 266 | Receptor kinase-like Gene Family | AT1G66910 | 47.970 | 3.82e-88 | 273 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRK10L-2 | Vvi16g0411 | Pkinase | 1.1e-37 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g0411 | - | - | vvi:100247801 | 544.273 |