Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g0407 | ATGGCTTCATCTCCTCAATCTTCAGCGCTCCACCACATCCGCCACCACCTCCTCTCTGATTCTGCCGACTCTACTACTGCTTCTACTTCATCTCCCCTTCTTCAACTTCTCTCTCATGCTGCTCCATCACATAACTCCCCCGTTTCTTCTCCTCAATCCTCAAATTCCTCCTTCTCTCCCAATTTCGCCCGTCGTAAGCCCACCCTCAGCATCGCGATTCCTCACCCTTCCCCTCCGCCCACCGCCGCTGATTCCGGCCACGAGAGGCACTACAGAGGCGTACGCCGCCGCCCCTGGGGGAAATTCGCAGCTGAGATCCGCGACCCCAACCGCCGAGGGTCTAGGGTTTGGCTTGGCACCTTCGACACCGCCGTCGAGGCCGCCAGGGCCTACGACCGAGCGGCCTTCAGGATGCGCGGCAGCAAAGCGATCCTCAACTTCCCTCTCGAAGCCGGAGCACCACCAGAGGCTTCGCAGCGGAACCCCAGCGTTCGGAAAAGGCTGAGAGAGACTGAGAAGAACGACAGAGAGACCGTGGAGGTCAAAGTAATAAAGAAGGAAGAGATAGTTGAGTCGCCGGTTTCGGACGTCACGTTGGCTAATACTTCGACGGCAGTCGCTTGTCCTTTAACGCCGTCATCCTGGACGGCCGTTTGGGATGGTGCAGATGGGAATGGTATTTTTAACGTGCCGCCTTTGTCGCCGTTATCACCCCTTGTGATGACATGA | 729 | 0.5748 | MASSPQSSALHHIRHHLLSDSADSTTASTSSPLLQLLSHAAPSHNSPVSSPQSSNSSFSPNFARRKPTLSIAIPHPSPPPTAADSGHERHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFDTAVEAARAYDRAAFRMRGSKAILNFPLEAGAPPEASQRNPSVRKRLRETEKNDRETVEVKVIKKEEIVESPVSDVTLANTSTAVACPLTPSSWTAVWDGADGNGIFNVPPLSPLSPLVMT* | 243 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g0407 | 242 | Gene3D | AP2/ERF domain | 89 | 150 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi16g0407 | 242 | PRINTS | Ethylene responsive element binding protein signature | 91 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi16g0407 | 242 | PRINTS | Ethylene responsive element binding protein signature | 114 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi16g0407 | 242 | FunFam | Ethylene-responsive transcription factor 2 | 89 | 150 | - | - | |
Vvi16g0407 | 242 | MobiDBLite | consensus disorder prediction | 21 | 94 | - | - | |
Vvi16g0407 | 242 | CDD | AP2 | 90 | 148 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi16g0407 | 242 | SUPERFAMILY | DNA-binding domain | 90 | 149 | IPR016177 | GO:0003677 | |
Vvi16g0407 | 242 | MobiDBLite | consensus disorder prediction | 21 | 64 | - | - | |
Vvi16g0407 | 242 | Pfam | AP2 domain | 90 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi16g0407 | 242 | SMART | rav1_2 | 90 | 154 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi16g0407 | 242 | PANTHER | DNA-BINDING DOMAIN | 38 | 173 | IPR044808 | GO:0003700|GO:0009873 | |
Vvi16g0407 | 242 | ProSiteProfiles | AP2/ERF domain profile. | 90 | 148 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g0407 | Vvi-Chr16 | 7044817 | 7045545 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g0407 | 8 | 242 | AP2-EREBP Transcription Factor Family | AT5G51190 | 44.715 | 1.84e-58 | 183 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vvi16g0407 | AP2 | 8.4e-16 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g0407 | K09286 | - | vvi:100254504 | 389.423 |