Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0407 ATGGCTTCATCTCCTCAATCTTCAGCGCTCCACCACATCCGCCACCACCTCCTCTCTGATTCTGCCGACTCTACTACTGCTTCTACTTCATCTCCCCTTCTTCAACTTCTCTCTCATGCTGCTCCATCACATAACTCCCCCGTTTCTTCTCCTCAATCCTCAAATTCCTCCTTCTCTCCCAATTTCGCCCGTCGTAAGCCCACCCTCAGCATCGCGATTCCTCACCCTTCCCCTCCGCCCACCGCCGCTGATTCCGGCCACGAGAGGCACTACAGAGGCGTACGCCGCCGCCCCTGGGGGAAATTCGCAGCTGAGATCCGCGACCCCAACCGCCGAGGGTCTAGGGTTTGGCTTGGCACCTTCGACACCGCCGTCGAGGCCGCCAGGGCCTACGACCGAGCGGCCTTCAGGATGCGCGGCAGCAAAGCGATCCTCAACTTCCCTCTCGAAGCCGGAGCACCACCAGAGGCTTCGCAGCGGAACCCCAGCGTTCGGAAAAGGCTGAGAGAGACTGAGAAGAACGACAGAGAGACCGTGGAGGTCAAAGTAATAAAGAAGGAAGAGATAGTTGAGTCGCCGGTTTCGGACGTCACGTTGGCTAATACTTCGACGGCAGTCGCTTGTCCTTTAACGCCGTCATCCTGGACGGCCGTTTGGGATGGTGCAGATGGGAATGGTATTTTTAACGTGCCGCCTTTGTCGCCGTTATCACCCCTTGTGATGACATGA 729 0.5748 MASSPQSSALHHIRHHLLSDSADSTTASTSSPLLQLLSHAAPSHNSPVSSPQSSNSSFSPNFARRKPTLSIAIPHPSPPPTAADSGHERHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFDTAVEAARAYDRAAFRMRGSKAILNFPLEAGAPPEASQRNPSVRKRLRETEKNDRETVEVKVIKKEEIVESPVSDVTLANTSTAVACPLTPSSWTAVWDGADGNGIFNVPPLSPLSPLVMT* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0407 242 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Vvi16g0407 242 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Vvi16g0407 242 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Vvi16g0407 242 FunFam Ethylene-responsive transcription factor 2 89 150 - -
Vvi16g0407 242 MobiDBLite consensus disorder prediction 21 94 - -
Vvi16g0407 242 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Vvi16g0407 242 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677
Vvi16g0407 242 MobiDBLite consensus disorder prediction 21 64 - -
Vvi16g0407 242 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Vvi16g0407 242 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Vvi16g0407 242 PANTHER DNA-BINDING DOMAIN 38 173 IPR044808 GO:0003700|GO:0009873
Vvi16g0407 242 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0407 Vvi-Chr16 7044817 7045545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0407 8 242 AP2-EREBP Transcription Factor Family AT5G51190 44.715 1.84e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0407 AP2 8.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0407 K09286 - vvi:100254504 389.423