Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0406 ATGGGAGAAGAAGCTTCATCACTGCAACTCATCCACCAACTCCTCCTCTCCGACTTTGATTCTATGGAAACCTTCGTCTCTCATGCAAGTCATTCGTTACGATCTTCGGCCTCTGATTCAAGTTTTCAAACCGAATCCCCAAAACCTTCCAGATTGAGTCATCGGCGGCCCCCACTCAGCATCTCCCTTCCTCCGCCACCCATTTCTCACACTTCGTCCTCGTTAGATTCCGGCGAGAGAAGGCACTATCGAGGAGTACGCCGCCGGCCTTGGGGAAAATTCGCGGCTGAGATTCGAGACCCGAATCGGAGAGGATCTAGGGTTTGGCTTGGAACCTTCGAGACAGCCATTGAAGCCGCCAGAGCTTATGATCGAGCTGCTTTCAAAATGCGTGGCTCCAAAGCTGTTCTTAATTTTCCTCTTGAAGCAGGGAATTGGTCGGATTCTGACCCACCGGCGACTTCCATCCGGAAAAGGGAGAGAGAAAGCGAAAGTGAAGAGAGGGAACAACCGGAGATCAAGGTTTTAAAGCAAGAAGAAGCCCCACCGGCTTCTGACAGCCCCGTGGTGGCGGAGGCGGCTAATGTTTTGGAGGCGAGTCCGCTAACGCCGTCAAGTTGGAGGACCGTTTGGGAGGAGAGAGACATGGAAGGGGCATTCCATTTGCCTCCGTTAACCCCGTTATCACCCCATCCTTGGATTGGATATTCTCGGCTCATAAGTTGA 726 0.5248 MGEEASSLQLIHQLLLSDFDSMETFVSHASHSLRSSASDSSFQTESPKPSRLSHRRPPLSISLPPPPISHTSSSLDSGERRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKMRGSKAVLNFPLEAGNWSDSDPPATSIRKRERESESEEREQPEIKVLKQEEAPPASDSPVVAEAANVLEASPLTPSSWRTVWEERDMEGAFHLPPLTPLSPHPWIGYSRLIS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0406 241 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Vvi16g0406 241 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Vvi16g0406 241 MobiDBLite consensus disorder prediction 30 84 - -
Vvi16g0406 241 MobiDBLite consensus disorder prediction 153 176 - -
Vvi16g0406 241 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Vvi16g0406 241 PANTHER DNA-BINDING DOMAIN 46 179 IPR044808 GO:0003700|GO:0009873
Vvi16g0406 241 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Vvi16g0406 241 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
Vvi16g0406 241 MobiDBLite consensus disorder prediction 30 48 - -
Vvi16g0406 241 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Vvi16g0406 241 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vvi16g0406 241 FunFam Ethylene-responsive transcription factor 2 81 142 - -
Vvi16g0406 241 MobiDBLite consensus disorder prediction 141 188 - -
Vvi16g0406 241 CDD AP2 90 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0406 Vvi-Chr16 7011607 7012443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0406 6 240 AP2-EREBP Transcription Factor Family AT5G51190 45.643 9.27e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0406 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0406 K09286 - vvi:100247649 370.548