Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0405 ATGGCAGATAAAGTTTCATCATTTCAACTCATCCACCAGCAACTCCTCTCCGACTTTGAATGTGTGGAAACCTTCGTTTCTGATGTAGGTGAAGCATCGCAAGCTTCAACTTCTGAATCAAGCGTTTCCGCCTCACATATTGTTCAAGTCTCTGATTACTTGAAACCCAATGAACATGAAAATAATTCTTTTTTCCTCCACCGCTCTACCTCTGCTCCATCTGGGGTCTTCCAGTTTGAAACCAAATCCCAAAAGACTTCCACATTAAGTCAACGGCGACCCCCACTCAGCATCTCAGTTCCTCCGCCACCCACTTCTCAGCCCTCATCGGCGCCAGTTGCCGGCGAGATCAGGCACTATAGAGGGGTCAGGCGAAGGCCATGGGGGAAATTCGCGGCGGAGATTCGGGACTCAAATCGGAGAGGATCGAGGGTATGGCTGGGGACCTTCGAGACAGCCATTGAAGCCGCCAGGGCTTATGATCGAGCAGCTTTCAAGATGCGTGGTTCCAAAGCCATTCTCAATTTCCCCCTTGAAGCAGGGAATTGGTCGGGTTCTGACCCACCGGCCACATCCGGCCGTAAAAGGGTGAGAGATTTTGGGACCGAAGTGAGAGAACAGGTGGAGATAAAGGTTTTAAAGCAAGAAGAAGTGGAGTTTCCGAAATCTGACAGCACAGCGGCGGCAGCAAGTGTTTTGGGGATCAGTCCATTAACGCCGTCGAGTTGGAGAGCTGTGTGGGAAGAGAGAGAGATGAAGGGAGTATTCAATTTGCCACCGTTAACGCCATCATGA 795 0.5044 MADKVSSFQLIHQQLLSDFECVETFVSDVGEASQASTSESSVSASHIVQVSDYLKPNEHENNSFFLHRSTSAPSGVFQFETKSQKTSTLSQRRPPLSISVPPPPTSQPSSAPVAGEIRHYRGVRRRPWGKFAAEIRDSNRRGSRVWLGTFETAIEAARAYDRAAFKMRGSKAILNFPLEAGNWSGSDPPATSGRKRVRDFGTEVREQVEIKVLKQEEVEFPKSDSTAAAASVLGISPLTPSSWRAVWEEREMKGVFNLPPLTPS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0405 264 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vvi16g0405 264 FunFam Ethylene-responsive transcription factor 2 118 179 - -
Vvi16g0405 264 PRINTS Ethylene responsive element binding protein signature 159 179 IPR001471 GO:0003700|GO:0006355
Vvi16g0405 264 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi16g0405 264 PANTHER DNA-BINDING DOMAIN 49 205 IPR044808 GO:0003700|GO:0009873
Vvi16g0405 264 MobiDBLite consensus disorder prediction 80 95 - -
Vvi16g0405 264 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Vvi16g0405 264 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Vvi16g0405 264 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0405 264 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0405 264 MobiDBLite consensus disorder prediction 80 115 - -
Vvi16g0405 264 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0405 Vvi-Chr16 6978524 6979318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0405 67 264 AP2-EREBP Transcription Factor Family AT5G51190 48.309 1.45e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0405 AP2 9.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0405 K09286 - vvi:100261410 485.337