Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0403 ATGGCAGAAGAAGCTTCATCACTGCACCTCATACACCAACTACTCCTCTCCGACTTTGAATCTTTCGAAAATTTAAATGATCCATCCCAAACTTCAACCTCTGATTCCAGTGTTTCCACCTCAGATATTATTCCGCTCTCTAATTACTTCGATCTCCATGAAGATGAAAACAACCCCTTTCTCCTCCACTGTTCTACTTCTGCTCCATCTGGGTTTTTCCAGTTTGAATCCAAATCCCCAAAAGCTTCCAGATTAAGTCATCGACGACCTCCACTCAGCATCTCAGTCCCTCTTCCCACCGTTTCTCAGTCGCAGGGGGAGTCCGATTCAGGAAATATCAGGCTTTATAGAGGCGTGCGCCGACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGGCTGCCATTGAAGCCGCCAGAGCTTATGATCGAGCTGCTTTCAAGATGCGTGGTTCCAAAGCTATTCTCAATTTCCCTCTTGAAGCTGGGAATTGGTCGGGTTCTGACCCACCAGCGATATCTGGCCAGAAAAGGGAGAGAGAGCGTGAGAGTGAAGGGAGAGAACTAGTGGAAAATAAGGTTTTAAAGAAAGACGAGCAGTCTTCGGAATCTGAGAGCACGGTGGCGGCGGCGGCAGCCAGTAATTCTTTAGGGGTTAGTCCACTAACCCCTTCAAATTGGAGGGCCGTGTGGGAGGAGAGAGAGATGGAAGGAATATTCAAGTTGCCACCGTTAACGCCGTTATCACCACATCCTTGGTTAGGATATTCTCAGCTTATAGTTTGA 828 0.4891 MAEEASSLHLIHQLLLSDFESFENLNDPSQTSTSDSSVSTSDIIPLSNYFDLHEDENNPFLLHCSTSAPSGFFQFESKSPKASRLSHRRPPLSISVPLPTVSQSQGESDSGNIRLYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFEAAIEAARAYDRAAFKMRGSKAILNFPLEAGNWSGSDPPAISGQKRERERESEGRELVENKVLKKDEQSSESESTVAAAAASNSLGVSPLTPSNWRAVWEEREMEGIFKLPPLTPLSPHPWLGYSQLIV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0403 275 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Vvi16g0403 275 SUPERFAMILY DNA-binding domain 115 174 IPR016177 GO:0003677
Vvi16g0403 275 CDD AP2 116 173 IPR001471 GO:0003700|GO:0006355
Vvi16g0403 275 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
Vvi16g0403 275 MobiDBLite consensus disorder prediction 96 111 - -
Vvi16g0403 275 FunFam Ethylene-responsive transcription factor 2 114 175 - -
Vvi16g0403 275 PANTHER DNA-BINDING DOMAIN 42 219 IPR044808 GO:0003700|GO:0009873
Vvi16g0403 275 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Vvi16g0403 275 PRINTS Ethylene responsive element binding protein signature 155 175 IPR001471 GO:0003700|GO:0006355
Vvi16g0403 275 MobiDBLite consensus disorder prediction 81 111 - -
Vvi16g0403 275 MobiDBLite consensus disorder prediction 180 229 - -
Vvi16g0403 275 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Vvi16g0403 275 MobiDBLite consensus disorder prediction 188 217 - -
Vvi16g0403 275 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0403 Vvi-Chr16 6903437 6904264 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0403 6 275 AP2-EREBP Transcription Factor Family AT5G51190 40.364 6.98e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi16g0403 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0403 K09286 - vvi:100252757 502.671